Variant report

Variant	rs35110829
Chromosome Location	chr3:56289900-56289901
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11130508	0.85[EUR][1000 genomes]
rs11130509	0.85[EUR][1000 genomes]
rs11130510	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130512	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11708280	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11712446	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11715860	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11719222	0.81[EUR][1000 genomes]
rs11917333	0.84[EUR][1000 genomes]
rs11919266	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11922083	0.92[EUR][1000 genomes]
rs13061518	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13064390	0.90[EUR][1000 genomes]
rs13065193	0.90[EUR][1000 genomes]
rs13065887	0.92[EUR][1000 genomes]
rs13076397	0.85[EUR][1000 genomes]
rs13077690	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13085545	0.85[EUR][1000 genomes]
rs13096861	0.85[EUR][1000 genomes]
rs1452220	0.87[EUR][1000 genomes]
rs1452222	0.89[EUR][1000 genomes]
rs1485672	0.81[EUR][1000 genomes]
rs17235410	0.81[EUR][1000 genomes]
rs17825379	0.85[EUR][1000 genomes]
rs2123181	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34392996	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34502592	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34699897	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34715192	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34718158	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34770968	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35215252	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35659930	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36044157	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4325896	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4974124	0.86[EUR][1000 genomes]
rs4974127	0.92[EUR][1000 genomes]
rs4974128	0.92[EUR][1000 genomes]
rs4974182	0.87[EUR][1000 genomes]
rs4974193	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4974197	0.80[EUR][1000 genomes]
rs56135751	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62253617	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs755322	0.85[EUR][1000 genomes]
rs7626886	0.91[EUR][1000 genomes]
rs7627149	0.91[EUR][1000 genomes]
rs9799155	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9867216	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56287600-56290200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:56288800-56290000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:56288800-56291400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:56288800-56311400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56289000-56291600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:56289400-56290000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:56289400-56290200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:56289400-56290400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:56289600-56290200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:56289600-56290400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:56289800-56290000	Enhancers	Fetal Kidney	kidney
13	chr3:56289800-56290000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:56289800-56290200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:56289800-56290200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr3:56289800-56290600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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