Variant report

Variant	rs4974205
Chromosome Location	chr3:56392722-56392723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11707219	0.81[EUR][1000 genomes]
rs11710335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711109	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11711928	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11713347	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11718333	0.82[EUR][1000 genomes]
rs11718664	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11920229	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11921059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11922800	0.80[ASN][1000 genomes]
rs11924629	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929325	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13078566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083082	0.84[EUR][1000 genomes]
rs13089019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13094881	0.82[EUR][1000 genomes]
rs34018952	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34158034	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34825657	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34967455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35835987	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35866364	0.82[EUR][1000 genomes]
rs35947588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35977673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076863	0.82[EUR][1000 genomes]
rs4246674	0.81[EUR][1000 genomes]
rs4974136	0.83[EUR][1000 genomes]
rs4974138	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974139	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974200	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4974201	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974203	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4974204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4974206	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4974210	0.81[EUR][1000 genomes]
rs4974211	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4974212	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55952137	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60814962	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6445787	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6776240	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7610959	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7615409	0.81[EUR][1000 genomes]
rs7628943	0.81[EUR][1000 genomes]
rs7637430	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7644975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56390000-56397200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:56390400-56401000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:56390600-56406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:56390800-56410000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:56391600-56393400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:56391600-56399400	Weak transcription	Fetal Brain Female	brain
7	chr3:56391800-56396800	Weak transcription	Liver	Liver
8	chr3:56391800-56400200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:56391800-56400400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:56391800-56400600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:56392000-56400600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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