Variant report

Variant	rs9831127
Chromosome Location	chr3:43759057-43759058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43758995-43759086	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:43758818-43760195	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43729811..43732596-chr3:43758996..43761442,2	K562	blood:
2	chr3:43732327..43735197-chr3:43758146..43760673,2	MCF-7	breast:

Variant related genes	Relation type
ABHD5	TF binding region
ENSG00000011198	Chromatin interaction
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9831161	0.85[AFR][1000 genomes]
rs9850860	0.84[AFR][1000 genomes]
rs9851269	0.83[AFR][1000 genomes]
rs9881802	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43733400-43767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:43733600-43767400	Weak transcription	Fetal Brain Male	brain
3	chr3:43733600-43768000	Weak transcription	Fetal Kidney	kidney
4	chr3:43734400-43762200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:43734800-43774400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:43735000-43761200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:43738000-43762200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:43738600-43763600	Weak transcription	Small Intestine	intestine
9	chr3:43738800-43763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:43740400-43762000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:43741000-43768000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:43741600-43762200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:43746200-43762200	Weak transcription	GM12878-XiMat	blood
14	chr3:43746200-43769800	Weak transcription	Fetal Heart	heart
15	chr3:43746800-43762600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:43749200-43762400	Strong transcription	K562	blood
17	chr3:43749600-43764400	Weak transcription	Stomach Mucosa	stomach
18	chr3:43749800-43763000	Weak transcription	A549	lung
19	chr3:43749800-43774400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:43751800-43773200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr3:43752000-43762800	Strong transcription	HSMM	muscle
22	chr3:43752000-43769600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:43752400-43764600	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:43752600-43761000	Strong transcription	Adipose Nuclei	Adipose
25	chr3:43752600-43762200	Strong transcription	Placenta	Placenta
26	chr3:43752800-43762400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:43752800-43762400	Strong transcription	Dnd41	blood
28	chr3:43752800-43774400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:43753000-43761800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:43753000-43762000	Strong transcription	Fetal Intestine Large	intestine
31	chr3:43753000-43765000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr3:43753200-43760000	Strong transcription	Osteobl	bone
33	chr3:43753200-43760200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:43753200-43760200	Strong transcription	Lung	lung
35	chr3:43753200-43760400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:43753200-43760800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:43753200-43761000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:43753200-43761000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:43753200-43761200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:43753200-43761400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:43753200-43761800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr3:43753200-43762400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:43753200-43762400	Strong transcription	Liver	Liver
44	chr3:43753200-43762800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:43753600-43762000	Strong transcription	Primary T cells from cord blood	blood
46	chr3:43754400-43759800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr3:43754400-43760600	Weak transcription	Brain Substantia Nigra	brain
48	chr3:43754600-43759200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr3:43754600-43759200	Weak transcription	Fetal Lung	lung
50	chr3:43754600-43762200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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