Variant report

Variant	rs9831161
Chromosome Location	chr3:43768018-43768019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43733603..43735980-chr3:43767151..43770128,2	MCF-7	breast:
2	chr3:43764384..43766881-chr3:43767533..43771176,3	K562	blood:
3	chr3:43762042..43764361-chr3:43767282..43769602,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17075993	1.00[MEX][hapmap];0.90[TSI][hapmap]
rs17320869	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17321267	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17408953	0.80[EUR][1000 genomes]
rs17409162	0.80[EUR][1000 genomes]
rs17474028	0.80[EUR][1000 genomes]
rs2127723	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55659203	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56389778	0.80[EUR][1000 genomes]
rs6762850	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6780460	1.00[LWK][hapmap]
rs740837	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617071	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9831055	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9831127	0.85[AFR][1000 genomes]
rs9850860	0.85[AFR][1000 genomes]
rs9851269	1.00[YRI][hapmap]
rs9856765	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9872385	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9877066	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9879791	0.82[EUR][1000 genomes]
rs9881802	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9831161	GPR3	trans	brain	seeQTL
rs9831161	FCER2	trans	brain	seeQTL
rs9831161	WNT1	trans	brain	seeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43734800-43774400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:43746200-43769800	Weak transcription	Fetal Heart	heart
3	chr3:43749800-43774400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:43751800-43773200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:43752000-43769600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:43752800-43774400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:43755400-43778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:43755600-43769200	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:43755600-43774200	Weak transcription	Thymus	Thymus
10	chr3:43755600-43775600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:43755600-43776200	Weak transcription	Fetal Brain Female	brain
12	chr3:43755600-43778200	Weak transcription	Brain Germinal Matrix	brain
13	chr3:43755600-43778200	Weak transcription	Fetal Stomach	stomach
14	chr3:43755600-43784000	Weak transcription	Ovary	ovary
15	chr3:43756200-43778400	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:43757000-43770600	Weak transcription	Fetal Intestine Small	intestine
17	chr3:43758200-43773400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:43759600-43774200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:43759600-43774200	Weak transcription	Spleen	Spleen
20	chr3:43759600-43775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr3:43759600-43778400	Weak transcription	Right Ventricle	heart
22	chr3:43759600-43778600	Weak transcription	Gastric	stomach
23	chr3:43760000-43777800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:43760200-43770200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:43760200-43771600	Weak transcription	Pancreas	Pancrea
26	chr3:43760200-43775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:43760200-43775600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr3:43760200-43777200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:43760200-43778800	Weak transcription	Aorta	Aorta
30	chr3:43760600-43769800	Weak transcription	Fetal Thymus	thymus
31	chr3:43760800-43774200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:43761000-43769600	Weak transcription	Fetal Lung	lung
33	chr3:43761000-43770200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr3:43761000-43771200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:43761000-43771200	Weak transcription	HepG2	liver
36	chr3:43761000-43771600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:43761000-43772200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:43761000-43774200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr3:43761000-43774400	Weak transcription	NHEK	skin
40	chr3:43761000-43777600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:43761200-43770200	Weak transcription	Colonic Mucosa	Colon
42	chr3:43761200-43775200	Weak transcription	HMEC	breast
43	chr3:43761200-43776800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:43761400-43772200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:43761600-43784200	Weak transcription	Brain Hippocampus Middle	brain
46	chr3:43761800-43769800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:43761800-43770200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr3:43761800-43775000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr3:43762000-43770000	Weak transcription	Psoas Muscle	Psoas
50	chr3:43762000-43774400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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