Variant report

Variant	rs9877066
Chromosome Location	chr3:43691501-43691502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17320869	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17321267	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17408953	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17409162	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17473616	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17474028	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2127723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55659203	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56389778	0.91[EUR][1000 genomes]
rs6762850	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs740837	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7617071	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7636753	1.00[CEU][hapmap]
rs9831055	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9831127	0.82[AFR][1000 genomes]
rs9831161	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9850860	0.89[AFR][1000 genomes]
rs9851269	1.00[YRI][hapmap]
rs9856765	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872385	1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9881802	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43690800-43691600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:43690800-43691600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:43690800-43691600	Active TSS	Duodenum Mucosa	Duodenum
4	chr3:43690800-43691600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr3:43690800-43691600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr3:43690800-43691600	Flanking Active TSS	K562	blood
7	chr3:43690800-43691800	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr3:43691000-43691600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr3:43691000-43691600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr3:43691000-43691600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:43691000-43691600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr3:43691000-43691600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr3:43691000-43691600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr3:43691000-43691800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:43691000-43691800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:43691200-43691600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:43691200-43691600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:43691200-43691600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:43691200-43691600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:43691200-43691600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr3:43691200-43691600	Enhancers	Colonic Mucosa	Colon
22	chr3:43691200-43691600	Enhancers	Esophagus	oesophagus
23	chr3:43691200-43691600	Enhancers	Placenta	Placenta
24	chr3:43691200-43691600	Enhancers	Left Ventricle	heart
25	chr3:43691200-43691600	Enhancers	Pancreas	Pancrea
26	chr3:43691200-43691600	Flanking Active TSS	Psoas Muscle	Psoas
27	chr3:43691200-43691600	Flanking Active TSS	HepG2	liver
28	chr3:43691400-43691600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr3:43691400-43691600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:43691400-43691600	Enhancers	Fetal Intestine Large	intestine
31	chr3:43691400-43691600	Enhancers	Gastric	stomach
32	chr3:43691400-43691600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr3:43691400-43691800	Enhancers	Liver	Liver
34	chr3:43691400-43691800	Enhancers	Stomach Mucosa	stomach

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