Variant report
| Variant | rs55659203 |
|---|---|
| Chromosome Location | chr3:43714796-43714797 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:9 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:43714125..43715958-chr3:43717657..43719647,2 | K562 | blood: | |
| 2 | chr3:43714125..43716115-chr3:43717644..43719157,2 | K562 | blood: | |
| 3 | chr3:43708734..43721567-chr3:43726609..43735922,29 | K562 | blood: | |
| 4 | chr3:43710551..43716177-chr3:43730774..43735158,11 | K562 | blood: | |
| 5 | chr3:43699724..43702634-chr3:43714279..43716424,2 | K562 | blood: | |
| 6 | chr3:43713088..43715824-chr3:43716519..43719193,2 | MCF-7 | breast: | |
| 7 | chr3:43690757..43693361-chr3:43714635..43716715,2 | K562 | blood: | |
| 8 | chr3:43701134..43702852-chr3:43714279..43716566,2 | K562 | blood: | |
| 9 | chr3:43690757..43693361-chr3:43714635..43716715,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000160746 | Chromatin interaction |
| ENSG00000011198 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs17320869 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17321267 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17408953 | 0.80[EUR][1000 genomes] |
| rs17409162 | 0.80[EUR][1000 genomes] |
| rs17474028 | 0.80[EUR][1000 genomes] |
| rs2127723 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs56389778 | 0.80[EUR][1000 genomes] |
| rs6762850 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs740837 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7617071 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9831055 | 0.86[EUR][1000 genomes] |
| rs9831161 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9856765 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9872385 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834673 | chr3:43622985-43799876 | Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | esv3345913 | chr3:43698997-43729867 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:43713600-43718000 | Enhancers | K562 | blood |
