Variant report

Variant	rs740837
Chromosome Location	chr3:43790037-43790038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43788680..43791474-chr3:43794569..43797297,2	K562	blood:
2	chr3:43782300..43785173-chr3:43789448..43791697,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17320869	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17321267	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17408953	0.80[EUR][1000 genomes]
rs17409162	0.80[EUR][1000 genomes]
rs17474028	0.80[EUR][1000 genomes]
rs2127723	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55659203	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56389778	0.80[EUR][1000 genomes]
rs6762850	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7617071	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9831055	0.86[EUR][1000 genomes]
rs9831161	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9856765	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9872385	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9879791	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43788800-43790200	Enhancers	Fetal Intestine Large	intestine
2	chr3:43788800-43790200	Enhancers	Lung	lung
3	chr3:43788800-43790400	Enhancers	Fetal Intestine Small	intestine
4	chr3:43788800-43790600	Enhancers	Adipose Nuclei	Adipose
5	chr3:43789000-43790200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:43789000-43790200	Enhancers	Placenta	Placenta
7	chr3:43789000-43790200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:43789000-43790200	Enhancers	NH-A	brain
9	chr3:43789000-43790200	Enhancers	Osteobl	bone
10	chr3:43789000-43790400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:43789000-43790400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:43789000-43790400	Enhancers	HSMM	muscle
13	chr3:43789000-43790600	Enhancers	HUVEC	blood vessel
14	chr3:43789000-43790600	Enhancers	K562	blood
15	chr3:43789000-43790600	Enhancers	NHLF	lung
16	chr3:43789000-43791000	Enhancers	NHDF-Ad	bronchial
17	chr3:43789000-43791600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:43789000-43791600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:43789200-43790200	Enhancers	Right Atrium	heart
20	chr3:43789200-43790200	Enhancers	HSMMtube	muscle
21	chr3:43789200-43790400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:43789200-43790400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:43789200-43790400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:43789200-43790600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:43789200-43790600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:43789400-43790200	Enhancers	Hela-S3	cervix
27	chr3:43789400-43790400	Enhancers	A549	lung
28	chr3:43789400-43790400	Enhancers	HMEC	breast
29	chr3:43789400-43790400	Enhancers	NHEK	skin
30	chr3:43789600-43790400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:43789600-43791000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:43789800-43790200	Enhancers	Left Ventricle	heart
33	chr3:43790000-43790200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr3:43790000-43790200	Flanking Active TSS	Brain Substantia Nigra	brain
35	chr3:43790000-43790600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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