Variant report

Variant	rs9872385
Chromosome Location	chr3:43690825-43690826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:43680304..43682151-chr3:43689977..43692168,2	K562	blood:
2	chr3:43683058..43686168-chr3:43689505..43691557,3	K562	blood:
3	chr3:43680997..43684458-chr3:43685498..43690929,5	K562	blood:
4	chr3:43690757..43693361-chr3:43714635..43716715,2	K562	blood:
5	chr3:43689355..43690941-chr3:43693998..43697008,3	K562	blood:
6	chr3:43690757..43693361-chr3:43714635..43716715,3	K562	blood:
7	chr3:43597398..43599637-chr3:43690273..43692203,2	K562	blood:
8	chr3:43598137..43600828-chr3:43690273..43693034,2	K562	blood:
9	chr3:43689764..43692550-chr3:43731279..43734101,2	K562	blood:
10	chr3:43689583..43692223-chr3:43727679..43730041,2	K562	blood:
11	chr3:43677109..43678918-chr3:43689320..43690947,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction
ENSG00000011198	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17320869	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17321267	0.86[AMR][1000 genomes]
rs17408953	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17409162	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17473616	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17474028	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2127723	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55659203	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56389778	0.86[EUR][1000 genomes]
rs6762850	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs740837	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7617071	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7636753	1.00[CEU][hapmap]
rs9831055	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9831161	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9850860	0.83[AFR][1000 genomes]
rs9851269	0.92[YRI][hapmap]
rs9856765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9877066	1.00[CEU][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43680800-43691200	Weak transcription	Colonic Mucosa	Colon
2	chr3:43680800-43691200	Weak transcription	Placenta	Placenta
3	chr3:43683800-43691000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:43683800-43691000	Weak transcription	Osteobl	bone
5	chr3:43688000-43691000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:43688200-43691000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:43688400-43691000	Enhancers	Fetal Intestine Small	intestine
8	chr3:43689000-43691200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:43689200-43691000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:43689200-43691000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:43689200-43691000	Weak transcription	HepG2	liver
12	chr3:43689400-43691200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:43689600-43691000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:43689600-43691000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:43689600-43691000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:43689600-43691000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:43689600-43691200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:43689800-43691000	Weak transcription	Fetal Intestine Large	intestine
19	chr3:43689800-43691000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:43690200-43691000	Weak transcription	Adipose Nuclei	Adipose
21	chr3:43690800-43691000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr3:43690800-43691400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr3:43690800-43691400	Active TSS	Brain Hippocampus Middle	brain
24	chr3:43690800-43691600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:43690800-43691600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr3:43690800-43691600	Active TSS	Duodenum Mucosa	Duodenum
27	chr3:43690800-43691600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr3:43690800-43691600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr3:43690800-43691600	Flanking Active TSS	K562	blood
30	chr3:43690800-43691800	Active TSS	Pancreatic Islets	Pancreatic Islet

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