Variant report

Variant	rs7636753
Chromosome Location	chr3:43509838-43509839
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:43509693-43509936	HepG2	liver:	n/a	n/a
2	FOXA2	chr3:43509720-43509910	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000251811	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1026888	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10510737	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075754	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17473616	1.00[CEU][hapmap]
rs17474028	1.00[CEU][hapmap]
rs1842805	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1905181	0.92[AFR][1000 genomes]
rs2372435	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441778	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769241	0.84[AFR][1000 genomes]
rs6772068	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795944	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6800306	0.83[AFR][1000 genomes]
rs6802567	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72865005	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72865013	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72865025	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72865027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72865029	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72865102	0.92[AFR][1000 genomes]
rs72866821	0.90[AFR][1000 genomes]
rs72866845	0.84[AFR][1000 genomes]
rs7617071	1.00[CEU][hapmap]
rs7628239	0.87[AFR][1000 genomes]
rs7651078	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs922642	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9758468	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9758483	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9831055	1.00[CEU][hapmap]
rs9872385	1.00[CEU][hapmap]
rs9877066	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
2	chr3:43497000-43514800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:43497000-43514800	Weak transcription	Gastric	stomach
4	chr3:43497000-43539400	Weak transcription	HSMM	muscle
5	chr3:43497200-43519600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:43497200-43520000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:43497200-43532600	Weak transcription	K562	blood
8	chr3:43503600-43514800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:43504800-43514800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:43504800-43514800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:43504800-43553400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:43505400-43518800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:43505600-43511600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:43506600-43522800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:43508600-43521800	Weak transcription	HSMMtube	muscle
16	chr3:43509000-43510000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:43509000-43510000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:43509000-43510200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:43509200-43510000	Enhancers	Brain Anterior Caudate	brain
20	chr3:43509200-43510000	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr3:43509200-43510200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr3:43509200-43510200	Enhancers	Brain Angular Gyrus	brain
23	chr3:43509400-43510000	Enhancers	Brain Substantia Nigra	brain
24	chr3:43509400-43510200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:43509400-43510200	Enhancers	HUVEC	blood vessel
26	chr3:43509400-43517800	Weak transcription	Primary T cells from cord blood	blood
27	chr3:43509600-43510000	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr3:43509600-43510000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:43509600-43510000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:43509600-43510000	Enhancers	Adipose Nuclei	Adipose
31	chr3:43509600-43510000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:43509600-43517600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:43509800-43510000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:43509800-43510000	Enhancers	Primary hematopoietic stem cells	blood
35	chr3:43509800-43510000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:43509800-43510000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:43509800-43510000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr3:43509800-43510000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr3:43509800-43510000	Enhancers	Psoas Muscle	Psoas
40	chr3:43509800-43511200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr3:43509800-43518000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links