Variant report

Variant	rs6762850
Chromosome Location	chr3:43672418-43672419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17320869	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17321267	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17408953	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17409162	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17473616	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17474028	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2127723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55659203	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56389778	0.91[EUR][1000 genomes]
rs6762312	1.00[YRI][hapmap]
rs6772433	1.00[YRI][hapmap]
rs740837	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7617071	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7636753	1.00[CEU][hapmap]
rs9831055	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9831161	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9856765	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872385	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9877066	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43664200-43688400	Weak transcription	Aorta	Aorta
2	chr3:43664400-43673600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:43664600-43673600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:43671000-43672800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:43671200-43673600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:43671200-43673600	Weak transcription	HSMMtube	muscle
7	chr3:43671200-43673800	Weak transcription	NH-A	brain
8	chr3:43671200-43680200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:43671400-43673600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:43671400-43673600	Enhancers	A549	lung
11	chr3:43671600-43673400	Weak transcription	Osteobl	bone
12	chr3:43671600-43673600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:43671600-43673600	Weak transcription	NHDF-Ad	bronchial
14	chr3:43671600-43673600	Weak transcription	NHLF	lung
15	chr3:43671600-43673800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:43672000-43672800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:43672200-43680000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:43672400-43675400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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