Variant report

Variant	rs9851269
Chromosome Location	chr3:43775025-43775026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43731645..43733891-chr3:43774294..43776729,2	MCF-7	breast:
2	chr3:43768950..43772362-chr3:43772704..43776401,5	K562	blood:
3	chr3:43731248..43733875-chr3:43774279..43776094,2	K562	blood:
4	chr3:43768252..43771488-chr3:43772704..43776863,5	K562	blood:

Variant related genes	Relation type
ENSG00000011198	Chromatin interaction
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9831127	0.83[AFR][1000 genomes]
rs9872385	0.92[YRI][hapmap]
rs9877066	1.00[YRI][hapmap]
rs9881802	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43755400-43778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43755600-43775600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:43755600-43776200	Weak transcription	Fetal Brain Female	brain
4	chr3:43755600-43778200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:43755600-43778200	Weak transcription	Fetal Stomach	stomach
6	chr3:43755600-43784000	Weak transcription	Ovary	ovary
7	chr3:43756200-43778400	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:43759600-43775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:43759600-43778400	Weak transcription	Right Ventricle	heart
10	chr3:43759600-43778600	Weak transcription	Gastric	stomach
11	chr3:43760000-43777800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:43760200-43775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:43760200-43775600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:43760200-43777200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:43760200-43778800	Weak transcription	Aorta	Aorta
16	chr3:43761000-43777600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:43761200-43775200	Weak transcription	HMEC	breast
18	chr3:43761200-43776800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:43761600-43784200	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:43762000-43775400	Weak transcription	Primary T cells from cord blood	blood
21	chr3:43762000-43776000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:43762200-43778600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:43762400-43775600	Weak transcription	Brain Angular Gyrus	brain
24	chr3:43762400-43777400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:43763000-43775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:43763200-43777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:43767600-43778400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:43768400-43775400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:43768400-43775400	Weak transcription	Left Ventricle	heart
30	chr3:43768400-43775400	Weak transcription	Lung	lung
31	chr3:43768800-43775200	Weak transcription	Primary B cells from cord blood	blood
32	chr3:43768800-43775200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:43768800-43778400	Weak transcription	Dnd41	blood
34	chr3:43769600-43775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:43769800-43777600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:43770200-43778200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:43770400-43778600	Weak transcription	Psoas Muscle	Psoas
38	chr3:43770800-43775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr3:43771000-43778200	Weak transcription	Liver	Liver
40	chr3:43772200-43777800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr3:43772400-43777800	Weak transcription	Stomach Mucosa	stomach
42	chr3:43772400-43778600	Weak transcription	Colonic Mucosa	Colon
43	chr3:43772400-43778600	Weak transcription	Pancreas	Pancrea
44	chr3:43772800-43777800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:43772800-43778400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr3:43773000-43776400	Weak transcription	Fetal Intestine Large	intestine
47	chr3:43773400-43775600	Strong transcription	Fetal Intestine Small	intestine
48	chr3:43773800-43775800	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr3:43774000-43777400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr3:43774200-43775400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links