Variant report

Variant	rs9832249
Chromosome Location	chr3:56837782-56837783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12636108	0.81[ASN][1000 genomes]
rs13434307	0.81[ASN][1000 genomes]
rs17057326	0.81[ASN][1000 genomes]
rs6803697	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56836000-56840200	Weak transcription	Fetal Heart	heart
2	chr3:56836400-56838000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:56836400-56838400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:56836400-56839200	Enhancers	Fetal Thymus	thymus
5	chr3:56836400-56839400	Weak transcription	Aorta	Aorta
6	chr3:56836400-56845800	Weak transcription	Lung	lung
7	chr3:56836600-56838200	Weak transcription	Brain Substantia Nigra	brain
8	chr3:56836600-56838400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:56836600-56838600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:56836600-56838600	Weak transcription	Brain Anterior Caudate	brain
11	chr3:56836600-56838800	Weak transcription	Brain Angular Gyrus	brain
12	chr3:56836600-56839600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:56836600-56840200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:56836600-56845200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:56836800-56838200	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:56836800-56838400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:56836800-56838400	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:56836800-56838600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:56836800-56838600	Weak transcription	Placenta	Placenta
20	chr3:56836800-56838600	Enhancers	HepG2	liver
21	chr3:56836800-56838800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:56836800-56838800	Weak transcription	Esophagus	oesophagus
23	chr3:56836800-56838800	Weak transcription	Fetal Brain Female	brain
24	chr3:56836800-56838800	Weak transcription	Fetal Kidney	kidney
25	chr3:56836800-56838800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:56836800-56839000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr3:56836800-56839200	Weak transcription	Fetal Brain Male	brain
28	chr3:56836800-56839400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:56836800-56840200	Weak transcription	Left Ventricle	heart
30	chr3:56836800-56840200	Weak transcription	Right Ventricle	heart
31	chr3:56836800-56844400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr3:56836800-56844600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:56836800-56845000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:56836800-56845400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:56836800-56846000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:56836800-56846800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:56837000-56838600	Weak transcription	Fetal Muscle Leg	muscle
38	chr3:56837000-56844000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr3:56837000-56844200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:56837000-56844200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:56837000-56844600	Weak transcription	Primary T cells from cord blood	blood
42	chr3:56837000-56844800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr3:56837200-56839000	Weak transcription	Fetal Stomach	stomach
44	chr3:56837200-56844000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:56837200-56844200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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