Variant report

Variant	rs9837466
Chromosome Location	chr3:112017540-112017541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13095299	0.80[ASN][1000 genomes]
rs4682398	0.82[ASN][1000 genomes]
rs4682399	0.94[CHB][hapmap]
rs7639794	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs8179893	0.80[ASN][1000 genomes]
rs9868582	0.81[EUR][1000 genomes]
rs9990216	0.81[CEU][hapmap]
rs9990220	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112012800-112017600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:112013000-112021400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:112013200-112020200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:112013200-112021000	Weak transcription	Thymus	Thymus
5	chr3:112013200-112021400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:112013400-112021000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:112013400-112022200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:112015800-112017800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:112015800-112018000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:112015800-112018000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:112015800-112018000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:112015800-112018000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:112016200-112017600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:112016200-112017800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:112016200-112017800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:112016200-112018000	Enhancers	Primary hematopoietic stem cells	blood
17	chr3:112016200-112018000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr3:112016200-112018000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:112016400-112017800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr3:112016400-112020800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:112016600-112017600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr3:112016600-112018000	Enhancers	Primary B cells from peripheral blood	blood
23	chr3:112016600-112018000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr3:112016600-112022000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:112016600-112022400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:112016800-112017600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:112017000-112021600	Weak transcription	Fetal Brain Male	brain
28	chr3:112017000-112022200	Weak transcription	Primary T cells from cord blood	blood
29	chr3:112017200-112017800	Enhancers	Primary B cells from cord blood	blood
30	chr3:112017200-112018000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr3:112017200-112022000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:112017400-112018000	Enhancers	Fetal Thymus	thymus
33	chr3:112017400-112018400	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links