Variant report
| Variant | rs9843245 |
|---|---|
| Chromosome Location | chr3:155819367-155819368 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10936024 | 0.80[CEU][hapmap] |
| rs11709514 | 0.85[CEU][hapmap] |
| rs11718399 | 0.85[CEU][hapmap] |
| rs11922447 | 0.81[CEU][hapmap] |
| rs13073556 | 0.85[CEU][hapmap] |
| rs1391889 | 0.81[CEU][hapmap] |
| rs1391890 | 0.86[CEU][hapmap] |
| rs1488425 | 0.85[CEU][hapmap] |
| rs1499056 | 0.81[CEU][hapmap] |
| rs1546229 | 0.81[CEU][hapmap] |
| rs16825744 | 0.95[ASN][1000 genomes] |
| rs1984473 | 0.85[CEU][hapmap] |
| rs4261831 | 0.85[CEU][hapmap] |
| rs4359774 | 0.85[CEU][hapmap] |
| rs4472010 | 0.81[CEU][hapmap] |
| rs4605502 | 0.82[CEU][hapmap] |
| rs4679761 | 0.82[CEU][hapmap] |
| rs4680232 | 0.85[CEU][hapmap] |
| rs4680233 | 0.82[CEU][hapmap] |
| rs4680237 | 0.82[CEU][hapmap] |
| rs4680249 | 0.81[CEU][hapmap] |
| rs62284931 | 0.94[ASN][1000 genomes] |
| rs6441035 | 0.82[CEU][hapmap] |
| rs6441050 | 0.81[CEU][hapmap] |
| rs6793964 | 0.81[CEU][hapmap] |
| rs728382 | 0.81[CEU][hapmap] |
| rs9289961 | 0.85[CEU][hapmap] |
| rs9814661 | 0.82[CEU][hapmap] |
| rs9832745 | 0.81[CEU][hapmap] |
| rs9856468 | 0.82[CEU][hapmap] |
| rs9862153 | 0.85[CEU][hapmap] |
| rs9864967 | 0.81[CEU][hapmap] |
| rs9866991 | 0.81[CEU][hapmap] |
| rs9882088 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592084 | chr3:155751484-155830578 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9843245 | MLF1 | cis | parietal | SCAN |
| rs9843245 | SCARNA7 | cis | cerebellum | SCAN |
| rs9843245 | SLC33A1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155812400-155820000 | Weak transcription | Liver | Liver |
| 2 | chr3:155817600-155819800 | Weak transcription | Pancreas | Pancrea |
