Variant report

Variant	rs9848604
Chromosome Location	chr3:111739817-111739818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111739252..111740779-chr3:111742849..111745341,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10934129	0.81[EUR][1000 genomes]
rs12485636	0.81[EUR][1000 genomes]
rs12490294	0.80[EUR][1000 genomes]
rs12492109	0.81[EUR][1000 genomes]
rs12492150	0.80[EUR][1000 genomes]
rs12495270	0.81[EUR][1000 genomes]
rs12495510	0.81[EUR][1000 genomes]
rs12495567	0.82[EUR][1000 genomes]
rs12496749	0.80[EUR][1000 genomes]
rs1530343	0.81[EUR][1000 genomes]
rs1574737	0.81[EUR][1000 genomes]
rs1907642	0.81[EUR][1000 genomes]
rs1907643	0.81[EUR][1000 genomes]
rs2218325	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2218326	0.81[EUR][1000 genomes]
rs2399402	0.81[EUR][1000 genomes]
rs28600686	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34328343	0.82[EUR][1000 genomes]
rs34353553	0.81[EUR][1000 genomes]
rs4416357	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580517	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588336	0.81[EUR][1000 genomes]
rs4682072	0.81[EUR][1000 genomes]
rs4682073	0.81[EUR][1000 genomes]
rs4682074	0.81[EUR][1000 genomes]
rs4682330	0.80[EUR][1000 genomes]
rs4682331	0.81[EUR][1000 genomes]
rs4682335	0.81[EUR][1000 genomes]
rs4682336	0.81[EUR][1000 genomes]
rs4682337	0.81[EUR][1000 genomes]
rs4682338	0.81[EUR][1000 genomes]
rs4682339	0.81[EUR][1000 genomes]
rs4682340	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682341	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682342	0.81[EUR][1000 genomes]
rs4682343	0.81[EUR][1000 genomes]
rs56164807	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6771549	0.81[EUR][1000 genomes]
rs6775175	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777972	0.81[EUR][1000 genomes]
rs6785244	0.81[EUR][1000 genomes]
rs6795242	0.81[EUR][1000 genomes]
rs729801	0.80[EUR][1000 genomes]
rs73216064	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7651134	0.81[EUR][1000 genomes]
rs7651142	0.81[EUR][1000 genomes]
rs976759	0.81[EUR][1000 genomes]
rs981267	0.81[EUR][1000 genomes]
rs9817034	0.81[EUR][1000 genomes]
rs9818290	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823102	0.81[EUR][1000 genomes]
rs9828227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831037	0.80[EUR][1000 genomes]
rs9833495	0.81[EUR][1000 genomes]
rs9834130	0.81[EUR][1000 genomes]
rs9836405	0.81[EUR][1000 genomes]
rs9838617	0.81[EUR][1000 genomes]
rs9838732	0.81[EUR][1000 genomes]
rs9838788	0.81[EUR][1000 genomes]
rs9839073	0.81[EUR][1000 genomes]
rs9839391	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843120	0.81[EUR][1000 genomes]
rs9848208	0.81[EUR][1000 genomes]
rs9856396	0.81[EUR][1000 genomes]
rs9856777	0.84[EUR][1000 genomes]
rs9858274	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858952	0.81[EUR][1000 genomes]
rs9862289	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9864788	0.81[EUR][1000 genomes]
rs9868331	0.81[EUR][1000 genomes]
rs9868654	0.81[EUR][1000 genomes]
rs9868673	0.81[EUR][1000 genomes]
rs9871103	0.81[EUR][1000 genomes]
rs9871444	0.81[EUR][1000 genomes]
rs9873914	0.80[EUR][1000 genomes]
rs9874652	0.81[EUR][1000 genomes]
rs9874944	0.81[EUR][1000 genomes]
rs9876283	0.81[EUR][1000 genomes]
rs9876569	0.81[EUR][1000 genomes]
rs9882873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111720200-111752800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:111732600-111741600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:111737200-111740200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:111738000-111741200	Enhancers	Adipose Nuclei	Adipose
5	chr3:111738400-111740000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:111738600-111740200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:111738800-111740400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:111739200-111740400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:111739200-111740400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:111739200-111740800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:111739600-111740000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr3:111739800-111740000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:111739800-111740000	Enhancers	Fetal Heart	heart
14	chr3:111739800-111740200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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