Variant report

Variant	rs2218325
Chromosome Location	chr3:111758207-111758208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr3:111757689-111758236	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr3:111757692-111758253	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111757946..111760451-chr3:111761059..111762628,2	MCF-7	breast:

Variant related genes	Relation type
TMPRSS7	TF binding region
ENSG00000176040	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10511304	1.00[YRI][hapmap]
rs2197205	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2197206	0.81[EUR][1000 genomes]
rs28600686	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4416357	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4580517	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4682073	0.80[CEU][hapmap]
rs4682079	0.81[EUR][1000 genomes]
rs4682340	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4682341	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4682344	0.81[CEU][hapmap]
rs4682346	0.81[EUR][1000 genomes]
rs4682347	0.81[EUR][1000 genomes]
rs4682348	0.81[EUR][1000 genomes]
rs56164807	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775175	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6777948	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73216064	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216065	0.81[EUR][1000 genomes]
rs73216066	0.81[EUR][1000 genomes]
rs7651142	0.80[CEU][hapmap]
rs9811691	1.00[YRI][hapmap]
rs9818290	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9828227	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9839391	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9840207	0.81[EUR][1000 genomes]
rs9848604	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9856777	0.84[EUR][1000 genomes]
rs9858274	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9862289	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882873	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111754400-111762600	Weak transcription	Fetal Heart	heart
2	chr3:111756200-111763200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:111756800-111759200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:111757400-111758400	Enhancers	Primary B cells from peripheral blood	blood
5	chr3:111757400-111758400	Enhancers	NHEK	skin
6	chr3:111757400-111758600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:111757400-111758600	Enhancers	HSMMtube	muscle
8	chr3:111757600-111758800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:111757800-111758600	Enhancers	GM12878-XiMat	blood
11	chr3:111758000-111758400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:111758000-111762400	Weak transcription	HMEC	breast
13	chr3:111758200-111758600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:111758200-111761800	Weak transcription	A549	lung
15	chr3:111758200-111763000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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