Variant report

Variant	rs4682348
Chromosome Location	chr3:111759023-111759024
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111757946..111760451-chr3:111761059..111762628,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176040	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1001516	0.91[EUR][1000 genomes]
rs10934129	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12485636	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12490294	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12492101	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12492109	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12492150	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12495270	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12495510	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12495567	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12496749	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13434231	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1530343	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1574737	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1907642	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1907643	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2197205	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2197206	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218325	0.81[EUR][1000 genomes]
rs2218326	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2399402	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34328343	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34353553	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4343597	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4386465	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4588336	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682069	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682070	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4682072	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682073	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682074	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682075	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682076	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682078	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682079	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682330	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682331	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682332	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4682333	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4682334	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682335	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682336	0.91[EUR][1000 genomes]
rs4682337	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682338	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682339	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682342	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682343	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682344	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682345	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56164807	0.80[EUR][1000 genomes]
rs6771549	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6777972	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6781582	0.91[EUR][1000 genomes]
rs6783542	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785244	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6795242	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs729801	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73216064	0.81[EUR][1000 genomes]
rs73216065	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216066	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621126	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7651134	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7651142	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs976758	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs976759	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs981267	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9817034	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823102	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9831037	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9831043	0.94[EUR][1000 genomes]
rs9833495	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9834130	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9836405	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838617	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838732	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838788	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9839073	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9840207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9843120	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9848208	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9856396	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9858952	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9862289	0.81[EUR][1000 genomes]
rs9862414	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864148	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9864788	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868274	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868331	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868654	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868673	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9871103	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9871444	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9873914	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9874652	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9874944	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9876283	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9876569	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111754400-111762600	Weak transcription	Fetal Heart	heart
2	chr3:111756200-111763200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:111756800-111759200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:111758000-111762400	Weak transcription	HMEC	breast
6	chr3:111758200-111761800	Weak transcription	A549	lung
7	chr3:111758200-111763000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:111758400-111761000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:111758400-111762200	Weak transcription	NHEK	skin
10	chr3:111758600-111760200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:111758600-111761600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:111758800-111759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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