Variant report

Variant	rs56164807
Chromosome Location	chr3:111755398-111755399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111749801..111752371-chr3:111754640..111756984,2	K562	blood:
2	chr3:111752540..111756075-chr3:111760637..111763869,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239439	Chromatin interaction
ENSG00000176040	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12495567	0.80[EUR][1000 genomes]
rs13434231	0.81[EUR][1000 genomes]
rs2197205	0.80[EUR][1000 genomes]
rs2197206	0.80[EUR][1000 genomes]
rs2218325	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28600686	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34328343	0.80[EUR][1000 genomes]
rs4416357	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4580517	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4682075	0.81[EUR][1000 genomes]
rs4682076	0.81[EUR][1000 genomes]
rs4682079	0.80[EUR][1000 genomes]
rs4682340	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4682341	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4682344	0.81[EUR][1000 genomes]
rs4682345	0.80[EUR][1000 genomes]
rs4682346	0.80[EUR][1000 genomes]
rs4682347	0.80[EUR][1000 genomes]
rs4682348	0.80[EUR][1000 genomes]
rs6775175	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6777948	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73216064	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216065	0.80[EUR][1000 genomes]
rs73216066	0.80[EUR][1000 genomes]
rs9818290	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9828227	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9839391	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9848604	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9856777	0.86[EUR][1000 genomes]
rs9858274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9862289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862414	0.81[EUR][1000 genomes]
rs9864148	0.81[EUR][1000 genomes]
rs9882873	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111754400-111762600	Weak transcription	Fetal Heart	heart
2	chr3:111754600-111756200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:111754600-111756800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:111754600-111758200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:111755000-111757600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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