Variant report

Variant	rs9864148
Chromosome Location	chr3:111751717-111751718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr3:111751175-111752024	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
RFKP2	TF binding region
TMPRSS7	TF binding region

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1001516	0.92[EUR][1000 genomes]
rs10934129	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12485636	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12490294	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12492101	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12492109	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12492150	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12495270	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12495510	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12495567	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12496749	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13434231	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1530343	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1574737	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1907642	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1907643	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2197205	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2197206	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2218326	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2399402	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34328343	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34353553	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4343597	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4386465	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4588336	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682069	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682070	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4682072	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682073	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682074	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682075	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682076	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682078	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682079	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682330	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682331	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682332	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682333	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682334	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682335	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682336	0.92[EUR][1000 genomes]
rs4682337	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682338	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682339	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682342	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682343	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682344	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682345	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682346	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682347	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682348	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56164807	0.81[EUR][1000 genomes]
rs6771549	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6777972	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6781582	0.93[EUR][1000 genomes]
rs6783542	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6785244	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6795242	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs729801	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73216065	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73216066	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621126	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7651134	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7651142	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs976758	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs976759	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs981267	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9817034	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9823102	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9831037	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9831043	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9833495	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9834130	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9836405	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9838617	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9838732	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9838788	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9839073	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9840207	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9843120	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9848208	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9856396	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9858952	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9862414	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9864788	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9868274	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9868331	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9868654	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9868673	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9871103	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9871444	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9873914	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9874652	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9874944	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9876283	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9876569	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111720200-111752800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:111747200-111752800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:111750400-111751800	Enhancers	Fetal Intestine Small	intestine
4	chr3:111750400-111752400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:111751200-111751800	Bivalent Enhancer	Fetal Heart	heart
6	chr3:111751600-111753400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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