Variant report

Variant	rs4682079
Chromosome Location	chr3:111757442-111757443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:111757442-111757492	BE2_C	brain:	n/a
2	chr3:111757442-111757492	HCM	heart:	n/a
3	chr3:111757442-111757492	SK-N-SH	brain:	n/a
4	chr3:111757442-111757492	CMK	blood:	n/a
5	chr3:111757442-111757492	GM12878	blood:	n/a
6	chr3:111757442-111757492	AG04449	skin:	fetal
7	chr3:111757442-111757492	RPTEC	kidney:	n/a
8	chr3:111757442-111757492	GM12892	blood:	n/a
9	chr3:111757442-111757492	SK-N-SH_RA	brain:	n/a
10	chr3:111757442-111757492	HEK293	kidney:	embryo
11	chr3:111757442-111757492	PANC-1	pancreas:	n/a
12	chr3:111757442-111757492	GM12891	blood:	n/a
13	chr3:111757442-111757492	GM19239	blood:	n/a
14	chr3:111757442-111757492	ECC-1	luminal epithelium:	n/a
15	chr3:111757442-111757492	HRPEpiC	eye:	n/a
16	chr3:111757442-111757492	Jurkat	blood:	n/a
17	chr3:111757442-111757492	NT2-D1	testis:	n/a
18	chr3:111757442-111757492	U87	brain:	n/a
19	chr3:111757442-111757492	HNPCEpiC	eye:	n/a
20	chr3:111757442-111757492	AG09309	skin:	n/a
21	chr3:111757442-111757492	AoSMC	blood vessel:	n/a
22	chr3:111757442-111757492	MCF10A-Er-Src	breast:	n/a
23	chr3:111757442-111757492	T-47D	breast:	n/a
24	chr3:111757442-111757492	HL-60	blood:	n/a
25	chr3:111757442-111757492	NB4	blood:	n/a
26	chr3:111757442-111757492	ovcar-3	ovarian:	n/a
27	chr3:111757442-111757492	LNCaP	prostate:	n/a
28	chr3:111757442-111757492	Caco-2	colon:	n/a
29	chr3:111757442-111757492	H1-hESC	embryonic stem cell:	embryo
30	chr3:111757442-111757492	HEEpiC	esophagus:	n/a
31	chr3:111757442-111757492	HCPEpiC	choroid plexus:	n/a
32	chr3:111757442-111757492	AG04450	lung:	fetal
33	chr3:111757442-111757492	HPAEpiC	pulmonary alveolar:	n/a
34	chr3:111757442-111757492	NHDF-neo	bronchial:	n/a
35	chr3:111757442-111757492	HCT-116	colon:	n/a
36	chr3:111757442-111757492	AG09319	gingival:	n/a
37	chr3:111757442-111757492	SAEC	small airway:	n/a
38	chr3:111757442-111757492	MCF-7	breast:	n/a
39	chr3:111757442-111757492	HMEC	breast:	n/a
40	chr3:111757442-111757492	Hepatocyte	liver:	n/a
41	chr3:111757442-111757492	NH-A	brain:	n/a
42	chr3:111757442-111757492	IMR90	lung:	fetal
43	chr3:111757442-111757492	AG10803	skin:	n/a
44	chr3:111757442-111757492	PrEC	prostate:	n/a
45	chr3:111757442-111757492	HepG2	liver:	n/a
46	chr3:111757442-111757492	A549	lung:	n/a
47	chr3:111757442-111757492	HRCEpiC	kidney:	n/a
48	chr3:111757442-111757492	HUVEC	blood vessel:	n/a
49	chr3:111757442-111757492	HCF	heart:	n/a
50	chr3:111757442-111757492	GM06990	blood:	n/a

No data

Variant related genes	Relation type
TMPRSS7	CpG island

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1001516	0.91[EUR][1000 genomes]
rs10934129	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12485636	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12490294	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12492101	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12492109	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12492150	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12495270	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12495510	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12495567	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12496749	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13434231	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1530343	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1574737	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1907642	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1907643	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2197205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2197206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218325	0.81[EUR][1000 genomes]
rs2218326	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2399402	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34328343	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34353553	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4343597	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4386465	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4588336	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682069	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682070	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4682072	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682073	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682074	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682078	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682330	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682331	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682332	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4682333	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4682334	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682335	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682336	0.91[EUR][1000 genomes]
rs4682337	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682338	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682339	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682342	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682343	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4682344	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682345	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682346	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682347	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682348	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56164807	0.80[EUR][1000 genomes]
rs6771549	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6777972	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6781582	0.91[EUR][1000 genomes]
rs6783542	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785244	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6795242	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs729801	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73216064	0.81[EUR][1000 genomes]
rs73216065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621126	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7651134	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7651142	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs976758	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs976759	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs981267	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9817034	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9823102	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9831037	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9831043	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9833495	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9834130	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9836405	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838617	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838732	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9838788	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9839073	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9840207	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9843120	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9848208	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9856396	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9858952	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9862289	0.81[EUR][1000 genomes]
rs9862414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864148	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9864788	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868331	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868654	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9868673	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9871103	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9871444	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9873914	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9874652	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9874944	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9876283	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9876569	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111754400-111762600	Weak transcription	Fetal Heart	heart
2	chr3:111754600-111758200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:111755000-111757600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:111756200-111763200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:111756800-111759200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:111757400-111757600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:111757400-111758200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:111757400-111758200	Enhancers	HSMM	muscle
9	chr3:111757400-111758400	Enhancers	Primary B cells from peripheral blood	blood
10	chr3:111757400-111758400	Enhancers	NHEK	skin
11	chr3:111757400-111758600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:111757400-111758600	Enhancers	HSMMtube	muscle

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