Variant report

Variant	rs9868274
Chromosome Location	chr3:111757830-111757831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:111757721-111757955	GM12878	blood:	n/a	chr3:111757839-111757848
2	SPI1	chr3:111757710-111758080	GM12891	blood:	n/a	chr3:111757839-111757848
3	SPI1	chr3:111757640-111758051	GM12891	blood:	n/a	chr3:111757839-111757848
4	YY1	chr3:111757727-111757977	K562	blood:	n/a	n/a
5	MYC	chr3:111757812-111758022	MCF10A-Er-Src	breast:	n/a	n/a
6	SPI1	chr3:111757696-111757985	GM12878	blood:	n/a	chr3:111757839-111757848
7	POLR2A	chr3:111757689-111758204	H1-neurons	neurons:	n/a	n/a
8	FOXA1	chr3:111757784-111758011	T-47D	breast:	n/a	n/a
9	SPI1	chr3:111757491-111758178	GM12878	blood:	n/a	chr3:111757839-111757848
10	MYC	chr3:111757797-111757959	MCF10A-Er-Src	breast:	n/a	n/a
11	GATA3	chr3:111757689-111758128	T-47D	breast:	n/a	n/a
12	REST	chr3:111757689-111758236	H1-neurons	neurons:	n/a	n/a
13	TEAD4	chr3:111757615-111758165	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr3:111757692-111758253	H1-neurons	neurons:	n/a	n/a
15	YY1	chr3:111757687-111758004	GM12878	blood:	n/a	n/a
16	ELF1	chr3:111757667-111757967	SK-N-SH	brain:	n/a	chr3:111757843-111757854
17	TEAD4	chr3:111757708-111758064	ECC-1	luminal epithelium:	n/a	n/a
18	YY1	chr3:111757771-111758021	GM12891	blood:	n/a	n/a
19	STAT3	chr3:111757780-111757933	MCF10A-Er-Src	breast:	n/a	chr3:111757837-111757848
20	ZNF384	chr3:111757653-111758023	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TMPRSS7	TF binding region

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1001516	0.90[EUR][1000 genomes]
rs10934129	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12485636	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12490294	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12492101	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12492109	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12492150	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12495270	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12495510	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12495567	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12496749	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13434231	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1530343	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1574737	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1907642	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1907643	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2197205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2197206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218326	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2399402	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34328343	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34353553	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4343597	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4386465	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4588336	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682069	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4682070	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4682072	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682073	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682074	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682078	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682330	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4682331	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682332	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4682333	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4682334	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4682335	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682336	0.90[EUR][1000 genomes]
rs4682337	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682338	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682339	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4682342	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682343	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4682344	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682345	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682346	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682347	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682348	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771549	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6777972	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6781582	0.90[EUR][1000 genomes]
rs6783542	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785244	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6795242	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs729801	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73216065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621126	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7651134	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7651142	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs976758	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs976759	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs981267	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9817034	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9823102	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9831037	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9831043	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9833495	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9834130	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9836405	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9838617	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9838732	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9838788	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9839073	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9840207	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9843120	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9848208	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9856396	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9858952	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9862414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9864148	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9864788	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9868331	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9868654	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9868673	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9871103	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9871444	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9873914	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9874652	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9874944	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9876283	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9876569	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111754400-111762600	Weak transcription	Fetal Heart	heart
2	chr3:111754600-111758200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:111756200-111763200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:111756800-111759200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:111757400-111758200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:111757400-111758200	Enhancers	HSMM	muscle
7	chr3:111757400-111758400	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:111757400-111758400	Enhancers	NHEK	skin
9	chr3:111757400-111758600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:111757400-111758600	Enhancers	HSMMtube	muscle
11	chr3:111757600-111758000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:111757600-111758000	Enhancers	HMEC	breast
13	chr3:111757600-111758800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:111757800-111758200	Enhancers	A549	lung
16	chr3:111757800-111758600	Enhancers	GM12878-XiMat	blood

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