Variant report

Variant	rs9848657
Chromosome Location	chr3:81497626-81497627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81497006..81498618-chr3:81501090..81503352,2	K562	blood:
2	chr3:81497118..81498955-chr3:81501852..81504094,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11918127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11920137	0.84[ASN][1000 genomes]
rs11920270	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11922101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13319440	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs1461607	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1984974	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2009766	0.84[ASN][1000 genomes]
rs2228389	0.80[ASN][1000 genomes]
rs2291593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28415702	0.84[ASN][1000 genomes]
rs28478451	0.80[ASN][1000 genomes]
rs28702560	0.80[ASN][1000 genomes]
rs28780766	0.84[ASN][1000 genomes]
rs3821555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.80[ASN][1000 genomes]
rs4856203	0.84[ASN][1000 genomes]
rs58339236	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58977050	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59161789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60844651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs72904318	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72904375	0.84[ASN][1000 genomes]
rs73853334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7617859	1.00[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap]
rs7619190	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7629051	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7652717	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9309873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs9813324	0.84[ASN][1000 genomes]
rs9815184	1.00[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs9820089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9822535	0.84[ASN][1000 genomes]
rs9823178	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9823805	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs9825828	0.84[ASN][1000 genomes]
rs9828209	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.84[ASN][1000 genomes]
rs9842657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9854820	0.84[ASN][1000 genomes]
rs9865935	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.84[ASN][1000 genomes]
rs9868543	0.84[ASN][1000 genomes]
rs9876575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9878273	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81486800-81503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:81491400-81497800	Enhancers	Osteobl	bone
3	chr3:81492000-81499600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:81492800-81500400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:81493600-81503000	Weak transcription	Aorta	Aorta
6	chr3:81494400-81498200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:81495000-81500800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:81495600-81499600	Enhancers	Adipose Nuclei	Adipose
9	chr3:81496800-81500200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:81497200-81500400	Weak transcription	Fetal Heart	heart
11	chr3:81497600-81498400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:81497600-81498400	Weak transcription	NHDF-Ad	bronchial
13	chr3:81497600-81498800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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