Variant report

Variant	rs9848772
Chromosome Location	chr3:49034252-49034253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:49034186-49034399	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
P4HTM	TF binding region

rs_ID	r²[population]
rs11713297	0.82[YRI][hapmap]
rs13324117	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs9837625	0.82[YRI][hapmap]
rs9852448	1.00[YRI][hapmap]
rs9880088	1.00[YRI][hapmap]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49028400-49035600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:49028600-49034600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:49028800-49043600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:49029000-49043600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:49029000-49043800	Weak transcription	Primary B cells from cord blood	blood
6	chr3:49029200-49035400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:49029200-49035600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:49029200-49036000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:49029200-49043400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:49029200-49043400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:49029400-49034800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:49029400-49034800	Weak transcription	Right Atrium	heart
13	chr3:49029400-49035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:49029400-49036600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:49029400-49036600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:49029400-49036800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:49029400-49039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:49029400-49041600	Weak transcription	Liver	Liver
19	chr3:49029400-49043400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:49029400-49043600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:49029400-49043600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:49029400-49043600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:49029400-49043600	Weak transcription	NH-A	brain
24	chr3:49029400-49043800	Weak transcription	Psoas Muscle	Psoas
25	chr3:49029400-49043800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr3:49029600-49034400	Weak transcription	Colonic Mucosa	Colon
27	chr3:49029600-49034600	Weak transcription	Fetal Brain Male	brain
28	chr3:49029600-49036600	Weak transcription	Pancreas	Pancrea
29	chr3:49029600-49039000	Weak transcription	Right Ventricle	heart
30	chr3:49029600-49040200	Weak transcription	Fetal Lung	lung
31	chr3:49029600-49042000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr3:49029600-49042200	Weak transcription	Ovary	ovary
33	chr3:49029600-49042400	Weak transcription	HMEC	breast
34	chr3:49029600-49043400	Weak transcription	Esophagus	oesophagus
35	chr3:49029600-49043400	Weak transcription	Fetal Kidney	kidney
36	chr3:49029600-49043400	Weak transcription	GM12878-XiMat	blood
37	chr3:49029600-49043400	Weak transcription	NHDF-Ad	bronchial
38	chr3:49029600-49043600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:49029600-49043600	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:49029600-49043600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:49029600-49043800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:49029600-49043800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:49029600-49043800	Weak transcription	HSMM	muscle
44	chr3:49029600-49043800	Weak transcription	HSMMtube	muscle
45	chr3:49029800-49034400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr3:49029800-49035000	Weak transcription	Hela-S3	cervix
47	chr3:49029800-49040000	Weak transcription	Stomach Mucosa	stomach
48	chr3:49029800-49043400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:49029800-49043400	Weak transcription	Dnd41	blood
50	chr3:49029800-49043600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links