Variant report

Variant	rs13324117
Chromosome Location	chr3:49012672-49012673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49011761..49014457-chr3:49021699..49024792,3	MCF-7	breast:
2	chr3:49011242..49013505-chr3:49027292..49029145,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273211	Chromatin interaction
ENSG00000178467	Chromatin interaction
ENSG00000223343	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13321689	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap]
rs3923913	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap]
rs9811724	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap]
rs9826085	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap]
rs9848772	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs9850498	1.00[ASW][hapmap];0.91[LWK][hapmap]
rs9852448	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs9880088	1.00[ASW][hapmap];0.89[YRI][hapmap]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48989800-49023600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:48990000-49024600	Strong transcription	Fetal Thymus	thymus
3	chr3:48994200-49023800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:48994400-49023600	Strong transcription	Dnd41	blood
5	chr3:48994800-49022000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:48998800-49023400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:48999000-49021200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:48999000-49021600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr3:48999200-49022000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:48999200-49022800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:48999400-49023600	Strong transcription	Primary T cells from cord blood	blood
12	chr3:48999400-49024400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:48999600-49021800	Strong transcription	Fetal Intestine Large	intestine
14	chr3:48999600-49024200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:48999600-49024400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:48999600-49024600	Strong transcription	Fetal Stomach	stomach
17	chr3:48999600-49024800	Strong transcription	Fetal Intestine Small	intestine
18	chr3:49000000-49022800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:49001200-49023600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:49002000-49023800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:49002000-49024000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:49002000-49024000	Strong transcription	Liver	Liver
23	chr3:49002000-49024400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:49002000-49024600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr3:49002000-49024800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr3:49002200-49023200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:49002200-49023200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:49002200-49023400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:49002200-49023800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:49002200-49023800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:49002200-49023800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:49002200-49024400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:49002200-49024400	Strong transcription	Adipose Nuclei	Adipose
34	chr3:49002200-49024400	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr3:49002200-49024400	Strong transcription	Thymus	Thymus
36	chr3:49002200-49024600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:49002400-49012800	Strong transcription	Right Ventricle	heart
38	chr3:49002400-49020200	Strong transcription	Left Ventricle	heart
39	chr3:49002400-49023200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:49002400-49024600	Strong transcription	Fetal Muscle Leg	muscle
41	chr3:49002400-49024600	Strong transcription	Stomach Smooth Muscle	stomach
42	chr3:49002400-49026600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:49002400-49026600	Weak transcription	Right Atrium	heart
44	chr3:49002800-49015000	Strong transcription	Placenta	Placenta
45	chr3:49002800-49023800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:49002800-49024600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr3:49003000-49014400	Strong transcription	Rectal Smooth Muscle	rectum
48	chr3:49003000-49024600	Strong transcription	Fetal Brain Female	brain
49	chr3:49003400-49014400	Strong transcription	Fetal Lung	lung
50	chr3:49003400-49023200	Strong transcription	Primary B cells from peripheral blood	blood

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