Variant report

Variant	rs9811724
Chromosome Location	chr3:48997425-48997426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr3:48997423-48997769	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:48997273..48999168-chr3:49008548..49010933,2	K562	blood:

Variant related genes	Relation type
ARIH2	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13315282	1.00[AMR][1000 genomes]
rs13321689	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs13324117	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap]
rs28413015	1.00[AMR][1000 genomes]
rs3923913	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7430684	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9826085	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9838123	1.00[AMR][1000 genomes]
rs9841401	1.00[AMR][1000 genomes]
rs9850498	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs9852448	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9880088	1.00[ASW][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:48965200-49004200	Weak transcription	Colonic Mucosa	Colon
4	chr3:48965400-49000000	Weak transcription	Esophagus	oesophagus
5	chr3:48965800-49000000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:48965800-49004000	Weak transcription	Fetal Brain Male	brain
7	chr3:48966000-49008000	Weak transcription	Fetal Kidney	kidney
8	chr3:48970400-49004400	Weak transcription	Pancreas	Pancrea
9	chr3:48970800-49002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:48972000-49000400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:48973600-48997600	Weak transcription	Osteobl	bone
12	chr3:48975000-48999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:48979000-49007600	Weak transcription	Stomach Mucosa	stomach
14	chr3:48981400-49002200	Weak transcription	A549	lung
15	chr3:48982800-48999600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:48982800-49002800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:48984600-48998400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:48986600-49004400	Weak transcription	NHLF	lung
19	chr3:48987000-49004000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr3:48987000-49004200	Weak transcription	Aorta	Aorta
21	chr3:48987200-49000000	Weak transcription	NH-A	brain
22	chr3:48987200-49002200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:48987200-49002200	Weak transcription	HMEC	breast
24	chr3:48988000-49000200	Weak transcription	Fetal Heart	heart
25	chr3:48988000-49011600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:48989800-49003000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:48989800-49023600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:48990000-49024600	Strong transcription	Fetal Thymus	thymus
29	chr3:48990200-49004000	Weak transcription	Small Intestine	intestine
30	chr3:48990200-49004400	Weak transcription	Brain Angular Gyrus	brain
31	chr3:48990200-49010000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:48990400-48998200	Weak transcription	GM12878-XiMat	blood
33	chr3:48990800-49000600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:48991000-48997600	Strong transcription	Fetal Muscle Leg	muscle
35	chr3:48991200-48997600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr3:48991800-48999400	Weak transcription	Right Ventricle	heart
37	chr3:48991800-49000600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:48992000-48999200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:48992200-48998200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:48992200-49000000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr3:48992200-49003600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:48993000-48999800	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:48994000-48997600	Strong transcription	Fetal Brain Female	brain
44	chr3:48994200-48997600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:48994200-48997600	Strong transcription	Fetal Stomach	stomach
46	chr3:48994200-49023800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:48994400-48997600	Strong transcription	Stomach Smooth Muscle	stomach
48	chr3:48994400-48997800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:48994400-48997800	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:48994400-49023600	Strong transcription	Dnd41	blood

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