Variant report

Variant	rs9852448
Chromosome Location	chr3:48966272-48966273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:48964532..48967407-chr3:49057327..49061980,4	K562	blood:
2	chr3:48883952..48885714-chr3:48966067..48967720,2	MCF-7	breast:
3	chr3:48956178..48958930-chr3:48964681..48967359,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224424	Chromatin interaction
ENSG00000221883	Chromatin interaction
ENSG00000114302	Chromatin interaction
ENSG00000207605	Chromatin interaction
ENSG00000177479	Chromatin interaction
ENSG00000178149	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000199032	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13321689	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs13324117	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs3923913	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9811724	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9826085	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs9848772	1.00[YRI][hapmap]
rs9850498	1.00[ASW][hapmap];0.83[LWK][hapmap]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48957400-49003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:48957600-48974400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:48959000-48968400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:48959000-48971600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:48959000-48974000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:48959000-48976000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:48959000-48976200	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:48959200-48968200	Strong transcription	Thymus	Thymus
9	chr3:48959200-48971000	Strong transcription	Fetal Muscle Leg	muscle
10	chr3:48959200-48973600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:48959400-48968200	Strong transcription	Fetal Intestine Large	intestine
12	chr3:48959400-48976200	Strong transcription	Fetal Thymus	thymus
13	chr3:48959600-48967200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:48959600-48975800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:48959800-48968200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:48960000-48966600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr3:48960000-48970000	Weak transcription	Pancreas	Pancrea
18	chr3:48960800-48967400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:48960800-48967400	Strong transcription	Fetal Brain Female	brain
20	chr3:48961400-48968200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr3:48962000-48970000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:48962000-49000400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:48962400-48966800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:48962800-48967400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:48962800-48967400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr3:48962800-48968200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:48963000-48968400	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:48963200-48967000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:48963200-48967400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
30	chr3:48963400-48966800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr3:48963400-48967000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:48963400-48967600	Genic enhancers	Hela-S3	cervix
33	chr3:48963400-48970400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr3:48963600-48967400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:48963600-48968200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:48963600-48968800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr3:48963800-48967200	Genic enhancers	Primary monocytes fromperipheralblood	blood
38	chr3:48963800-48967200	Genic enhancers	Adipose Nuclei	Adipose
39	chr3:48963800-48967200	Genic enhancers	Liver	Liver
40	chr3:48964000-48966400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:48964000-48967200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:48964000-48967400	Genic enhancers	Muscle Satellite Cultured Cells	--
43	chr3:48964000-48967800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:48964000-48968800	Strong transcription	Fetal Lung	lung
45	chr3:48964200-48966400	Genic enhancers	HUVEC	blood vessel
46	chr3:48964200-48966800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:48964200-48966800	Genic enhancers	HMEC	breast
48	chr3:48964200-48967200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:48964200-48967400	Genic enhancers	Rectal Smooth Muscle	rectum
50	chr3:48964200-48967400	Genic enhancers	K562	blood

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