Variant report

Variant	rs9851037
Chromosome Location	chr3:146415737-146415738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10222373	0.93[EUR][1000 genomes]
rs10470459	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10470460	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12330695	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13324524	0.82[EUR][1000 genomes]
rs13324873	0.81[EUR][1000 genomes]
rs13325265	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13353410	0.90[EUR][1000 genomes]
rs28498057	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28539305	0.85[AMR][1000 genomes]
rs28729741	0.82[AMR][1000 genomes]
rs56737593	0.93[EUR][1000 genomes]
rs58365455	0.91[EUR][1000 genomes]
rs6783801	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7610634	0.90[EUR][1000 genomes]
rs7614167	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7626080	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9810942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9818401	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9820879	0.81[EUR][1000 genomes]
rs9826710	0.82[EUR][1000 genomes]
rs9831349	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9835696	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9836951	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9841310	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9841704	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9847241	0.81[EUR][1000 genomes]
rs9850124	0.84[EUR][1000 genomes]
rs9851720	0.96[EUR][1000 genomes]
rs9852256	0.82[AMR][1000 genomes]
rs9857093	0.96[EUR][1000 genomes]
rs9859125	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9860770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9861056	0.84[EUR][1000 genomes]
rs9862802	0.85[AMR][1000 genomes]
rs9863350	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9863944	0.82[AMR][1000 genomes]
rs9868411	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9868687	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9869328	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9872644	0.84[EUR][1000 genomes]
rs9874910	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9881534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv12803	chr3:146415598-146417349	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146409600-146422000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:146415200-146422800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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