Variant report

Variant	rs9852256
Chromosome Location	chr3:146375764-146375765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10222373	1.00[ASN][1000 genomes]
rs10470459	1.00[ASN][1000 genomes]
rs10470460	1.00[ASN][1000 genomes]
rs10513298	1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[ASN][1000 genomes]
rs10935644	1.00[ASN][1000 genomes]
rs12330695	1.00[ASN][1000 genomes]
rs12491246	1.00[CHD][hapmap]
rs12695830	1.00[ASN][1000 genomes]
rs1319533	1.00[ASN][1000 genomes]
rs13324524	1.00[ASN][1000 genomes]
rs13324873	1.00[ASN][1000 genomes]
rs13325265	1.00[ASN][1000 genomes]
rs13353410	1.00[ASN][1000 genomes]
rs1402737	1.00[ASN][1000 genomes]
rs1431967	1.00[ASN][1000 genomes]
rs1431969	1.00[ASN][1000 genomes]
rs1521579	1.00[ASN][1000 genomes]
rs1521588	1.00[ASN][1000 genomes]
rs16858488	1.00[CHD][hapmap]
rs17367522	1.00[ASN][1000 genomes]
rs17368418	1.00[CHD][hapmap]
rs17368735	1.00[ASN][1000 genomes]
rs17431845	1.00[LWK][hapmap];1.00[ASN][1000 genomes]
rs17431888	1.00[ASN][1000 genomes]
rs17431978	1.00[ASN][1000 genomes]
rs17432215	1.00[ASN][1000 genomes]
rs17433714	1.00[ASN][1000 genomes]
rs17433833	1.00[CHD][hapmap]
rs2116430	1.00[ASN][1000 genomes]
rs2116431	1.00[ASN][1000 genomes]
rs28498057	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28539305	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2868954	1.00[ASN][1000 genomes]
rs28729741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3773521	1.00[ASW][hapmap]
rs55848109	1.00[ASN][1000 genomes]
rs56046201	1.00[ASN][1000 genomes]
rs56737593	1.00[ASN][1000 genomes]
rs58365455	1.00[ASN][1000 genomes]
rs6771456	1.00[ASN][1000 genomes]
rs6783801	1.00[ASN][1000 genomes]
rs6794178	1.00[ASN][1000 genomes]
rs6808571	1.00[ASN][1000 genomes]
rs6809355	1.00[ASN][1000 genomes]
rs73156912	1.00[ASN][1000 genomes]
rs73156972	1.00[ASN][1000 genomes]
rs73156981	1.00[ASN][1000 genomes]
rs73156988	1.00[ASN][1000 genomes]
rs73156990	1.00[ASN][1000 genomes]
rs73159103	1.00[ASN][1000 genomes]
rs73159127	1.00[ASN][1000 genomes]
rs73159146	1.00[ASN][1000 genomes]
rs73159151	1.00[ASN][1000 genomes]
rs73159171	1.00[ASN][1000 genomes]
rs7610634	1.00[ASN][1000 genomes]
rs7613246	1.00[ASN][1000 genomes]
rs7614167	1.00[ASN][1000 genomes]
rs7625618	1.00[ASN][1000 genomes]
rs7626080	1.00[ASN][1000 genomes]
rs7636940	1.00[ASN][1000 genomes]
rs7640043	1.00[ASN][1000 genomes]
rs7642952	1.00[ASN][1000 genomes]
rs7650149	1.00[ASN][1000 genomes]
rs9289733	1.00[ASN][1000 genomes]
rs9810942	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9814690	1.00[ASN][1000 genomes]
rs9818401	1.00[ASN][1000 genomes]
rs9819872	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs9820879	1.00[ASN][1000 genomes]
rs9826710	1.00[ASN][1000 genomes]
rs9831349	1.00[ASN][1000 genomes]
rs9835696	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9836951	1.00[ASN][1000 genomes]
rs9841310	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9841704	1.00[ASN][1000 genomes]
rs9847241	1.00[ASN][1000 genomes]
rs9850124	1.00[ASN][1000 genomes]
rs9851037	0.82[AMR][1000 genomes]
rs9851720	1.00[ASN][1000 genomes]
rs9857093	1.00[ASN][1000 genomes]
rs9859125	1.00[ASN][1000 genomes]
rs9860770	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9861056	1.00[ASN][1000 genomes]
rs9862802	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863350	1.00[ASN][1000 genomes]
rs9863944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868411	1.00[ASN][1000 genomes]
rs9868687	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9869328	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9872644	1.00[ASN][1000 genomes]
rs9874910	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9875638	1.00[ASW][hapmap]
rs9881534	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv4047	chr3:146368154-146401858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3369526	chr3:146374303-146400737	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv591937	chr3:146375764-146390316	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146373400-146376200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:146375400-146376400	Enhancers	Ovary	ovary
3	chr3:146375600-146376400	Enhancers	Dnd41	blood
4	chr3:146375600-146376800	Enhancers	HepG2	liver

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