Variant report

Variant	rs10222373
Chromosome Location	chr3:146449690-146449691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10470459	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10470460	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513298	1.00[ASN][1000 genomes]
rs10935644	1.00[ASN][1000 genomes]
rs12330695	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12695830	1.00[ASN][1000 genomes]
rs1319533	1.00[ASN][1000 genomes]
rs13324524	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13324873	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13325265	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353410	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402737	1.00[ASN][1000 genomes]
rs1431967	1.00[ASN][1000 genomes]
rs1431969	1.00[ASN][1000 genomes]
rs1521579	1.00[ASN][1000 genomes]
rs1521588	1.00[ASN][1000 genomes]
rs17367522	1.00[ASN][1000 genomes]
rs17368735	1.00[ASN][1000 genomes]
rs17431845	1.00[ASN][1000 genomes]
rs17431888	1.00[ASN][1000 genomes]
rs17431978	1.00[ASN][1000 genomes]
rs17432215	1.00[ASN][1000 genomes]
rs17433714	1.00[ASN][1000 genomes]
rs2116430	1.00[ASN][1000 genomes]
rs2116431	1.00[ASN][1000 genomes]
rs28498057	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539305	1.00[ASN][1000 genomes]
rs2868954	1.00[ASN][1000 genomes]
rs28729741	1.00[ASN][1000 genomes]
rs55848109	1.00[ASN][1000 genomes]
rs56046201	1.00[ASN][1000 genomes]
rs56737593	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58365455	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771456	1.00[ASN][1000 genomes]
rs6783801	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794178	1.00[ASN][1000 genomes]
rs6806164	0.91[AFR][1000 genomes]
rs6808571	1.00[ASN][1000 genomes]
rs6808832	0.91[AFR][1000 genomes]
rs6809099	0.91[AFR][1000 genomes]
rs6809355	1.00[ASN][1000 genomes]
rs73156912	1.00[ASN][1000 genomes]
rs73156972	1.00[ASN][1000 genomes]
rs73156981	1.00[ASN][1000 genomes]
rs73156988	1.00[ASN][1000 genomes]
rs73156990	1.00[ASN][1000 genomes]
rs73159103	1.00[ASN][1000 genomes]
rs73159127	1.00[ASN][1000 genomes]
rs73159146	1.00[ASN][1000 genomes]
rs73159151	1.00[ASN][1000 genomes]
rs73159171	1.00[ASN][1000 genomes]
rs73865826	0.85[AFR][1000 genomes]
rs7610634	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613246	1.00[ASN][1000 genomes]
rs7614167	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625618	1.00[ASN][1000 genomes]
rs7626080	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636940	1.00[ASN][1000 genomes]
rs7640043	1.00[ASN][1000 genomes]
rs7642952	1.00[ASN][1000 genomes]
rs7650149	1.00[ASN][1000 genomes]
rs9289733	1.00[ASN][1000 genomes]
rs9810942	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814690	1.00[ASN][1000 genomes]
rs9818401	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9819872	1.00[ASN][1000 genomes]
rs9820879	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826710	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831349	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835696	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836951	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841310	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841704	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847241	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850124	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851037	0.93[EUR][1000 genomes]
rs9851720	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852256	1.00[ASN][1000 genomes]
rs9857093	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859125	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860770	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861056	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862802	1.00[ASN][1000 genomes]
rs9863350	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863944	1.00[ASN][1000 genomes]
rs9868411	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868687	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869328	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872644	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874910	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881534	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1001931	chr3:146419061-146745361	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146449600-146450000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:146449600-146450200	Enhancers	HMEC	breast

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