Variant report
| Variant | rs73159171 |
|---|---|
| Chromosome Location | chr3:146377965-146377966 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:86)
| rs_ID | r2[population] |
|---|---|
| rs10222373 | 1.00[ASN][1000 genomes] |
| rs10470459 | 1.00[ASN][1000 genomes] |
| rs10470460 | 1.00[ASN][1000 genomes] |
| rs10513298 | 1.00[ASN][1000 genomes] |
| rs10935644 | 1.00[ASN][1000 genomes] |
| rs12330695 | 1.00[ASN][1000 genomes] |
| rs12695830 | 1.00[ASN][1000 genomes] |
| rs1319533 | 1.00[ASN][1000 genomes] |
| rs13324524 | 1.00[ASN][1000 genomes] |
| rs13324873 | 1.00[ASN][1000 genomes] |
| rs13325265 | 1.00[ASN][1000 genomes] |
| rs13353410 | 1.00[ASN][1000 genomes] |
| rs1402737 | 1.00[ASN][1000 genomes] |
| rs1431967 | 1.00[ASN][1000 genomes] |
| rs1431969 | 1.00[ASN][1000 genomes] |
| rs1521579 | 1.00[ASN][1000 genomes] |
| rs1521588 | 1.00[ASN][1000 genomes] |
| rs17367522 | 1.00[ASN][1000 genomes] |
| rs17368735 | 1.00[ASN][1000 genomes] |
| rs17431845 | 1.00[ASN][1000 genomes] |
| rs17431888 | 1.00[ASN][1000 genomes] |
| rs17431978 | 1.00[ASN][1000 genomes] |
| rs17432215 | 1.00[ASN][1000 genomes] |
| rs17433714 | 1.00[ASN][1000 genomes] |
| rs2116430 | 1.00[ASN][1000 genomes] |
| rs2116431 | 1.00[ASN][1000 genomes] |
| rs28498057 | 1.00[ASN][1000 genomes] |
| rs28539305 | 1.00[ASN][1000 genomes] |
| rs2868954 | 1.00[ASN][1000 genomes] |
| rs28729741 | 1.00[ASN][1000 genomes] |
| rs55848109 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56046201 | 1.00[ASN][1000 genomes] |
| rs56737593 | 1.00[ASN][1000 genomes] |
| rs58365455 | 1.00[ASN][1000 genomes] |
| rs6771456 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6783801 | 1.00[ASN][1000 genomes] |
| rs6794178 | 1.00[ASN][1000 genomes] |
| rs6808571 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6809355 | 1.00[ASN][1000 genomes] |
| rs73156912 | 1.00[ASN][1000 genomes] |
| rs73156972 | 1.00[ASN][1000 genomes] |
| rs73156981 | 1.00[ASN][1000 genomes] |
| rs73156988 | 1.00[ASN][1000 genomes] |
| rs73156990 | 1.00[ASN][1000 genomes] |
| rs73159103 | 1.00[ASN][1000 genomes] |
| rs73159127 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73159146 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73159151 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7610634 | 1.00[ASN][1000 genomes] |
| rs7613246 | 1.00[ASN][1000 genomes] |
| rs7614167 | 1.00[ASN][1000 genomes] |
| rs7625618 | 1.00[ASN][1000 genomes] |
| rs7626080 | 1.00[ASN][1000 genomes] |
| rs7636940 | 1.00[ASN][1000 genomes] |
| rs7640043 | 1.00[ASN][1000 genomes] |
| rs7642952 | 1.00[ASN][1000 genomes] |
| rs7650149 | 1.00[ASN][1000 genomes] |
| rs9289733 | 1.00[ASN][1000 genomes] |
| rs9810942 | 1.00[ASN][1000 genomes] |
| rs9814690 | 1.00[ASN][1000 genomes] |
| rs9818401 | 1.00[ASN][1000 genomes] |
| rs9819872 | 1.00[ASN][1000 genomes] |
| rs9820879 | 1.00[ASN][1000 genomes] |
| rs9826710 | 1.00[ASN][1000 genomes] |
| rs9831349 | 1.00[ASN][1000 genomes] |
| rs9835696 | 1.00[ASN][1000 genomes] |
| rs9836951 | 1.00[ASN][1000 genomes] |
| rs9841310 | 1.00[ASN][1000 genomes] |
| rs9841704 | 1.00[ASN][1000 genomes] |
| rs9847241 | 1.00[ASN][1000 genomes] |
| rs9850124 | 1.00[ASN][1000 genomes] |
| rs9851720 | 1.00[ASN][1000 genomes] |
| rs9852256 | 1.00[ASN][1000 genomes] |
| rs9857093 | 1.00[ASN][1000 genomes] |
| rs9859125 | 1.00[ASN][1000 genomes] |
| rs9860770 | 1.00[ASN][1000 genomes] |
| rs9861056 | 1.00[ASN][1000 genomes] |
| rs9862802 | 1.00[ASN][1000 genomes] |
| rs9863350 | 1.00[ASN][1000 genomes] |
| rs9863944 | 1.00[ASN][1000 genomes] |
| rs9868411 | 1.00[ASN][1000 genomes] |
| rs9868687 | 1.00[ASN][1000 genomes] |
| rs9869328 | 1.00[ASN][1000 genomes] |
| rs9872644 | 1.00[ASN][1000 genomes] |
| rs9874910 | 1.00[ASN][1000 genomes] |
| rs9881534 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516386 | chr3:146366513-146758405 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv4047 | chr3:146368154-146401858 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv3369526 | chr3:146374303-146400737 | Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv591937 | chr3:146375764-146390316 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146377600-146378600 | Enhancers | Dnd41 | blood |
