Variant report

Variant	rs9819872
Chromosome Location	chr3:146288803-146288804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr3:146288569-146288930	K562	blood:	n/a	n/a

Variant related genes	Relation type
RNU6-428P	TF binding region

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10212287	1.00[ASW][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10222373	1.00[ASN][1000 genomes]
rs10470459	1.00[ASN][1000 genomes]
rs10470460	1.00[ASN][1000 genomes]
rs10513298	1.00[CHD][hapmap];0.90[TSI][hapmap];1.00[ASN][1000 genomes]
rs12330695	1.00[ASN][1000 genomes]
rs12491246	1.00[CHD][hapmap]
rs13319452	0.87[AFR][1000 genomes]
rs13325265	1.00[ASN][1000 genomes]
rs13353410	1.00[ASN][1000 genomes]
rs16858488	1.00[CHD][hapmap]
rs17367522	1.00[ASN][1000 genomes]
rs17368418	1.00[CHD][hapmap]
rs17368735	1.00[ASN][1000 genomes]
rs17431845	0.90[TSI][hapmap];1.00[ASN][1000 genomes]
rs17431888	1.00[ASN][1000 genomes]
rs17431978	1.00[ASN][1000 genomes]
rs17432215	1.00[ASN][1000 genomes]
rs17433714	1.00[ASN][1000 genomes]
rs17433833	1.00[CHD][hapmap]
rs28498057	1.00[ASN][1000 genomes]
rs28539305	1.00[ASN][1000 genomes]
rs28729741	1.00[ASN][1000 genomes]
rs55848109	1.00[ASN][1000 genomes]
rs56046201	1.00[ASN][1000 genomes]
rs56737593	1.00[ASN][1000 genomes]
rs58365455	1.00[ASN][1000 genomes]
rs6771456	1.00[ASN][1000 genomes]
rs6783801	1.00[ASN][1000 genomes]
rs6794178	1.00[ASN][1000 genomes]
rs6808571	1.00[ASN][1000 genomes]
rs73156912	1.00[ASN][1000 genomes]
rs73156972	1.00[ASN][1000 genomes]
rs73156981	1.00[ASN][1000 genomes]
rs73156988	1.00[ASN][1000 genomes]
rs73156990	1.00[ASN][1000 genomes]
rs73159103	1.00[ASN][1000 genomes]
rs73159127	1.00[ASN][1000 genomes]
rs73159146	1.00[ASN][1000 genomes]
rs73159151	1.00[ASN][1000 genomes]
rs73159171	1.00[ASN][1000 genomes]
rs7610634	1.00[ASN][1000 genomes]
rs7613246	1.00[ASN][1000 genomes]
rs7614167	1.00[ASN][1000 genomes]
rs7625618	1.00[ASN][1000 genomes]
rs7626080	1.00[ASN][1000 genomes]
rs9289724	0.85[AFR][1000 genomes]
rs9810942	1.00[ASN][1000 genomes]
rs9813883	0.84[ASW][hapmap];0.92[LWK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9813974	0.84[ASW][hapmap];0.85[AFR][1000 genomes]
rs9818401	1.00[ASN][1000 genomes]
rs9823549	0.85[AFR][1000 genomes]
rs9831349	1.00[ASN][1000 genomes]
rs9835696	1.00[ASN][1000 genomes]
rs9836951	1.00[ASN][1000 genomes]
rs9841310	1.00[ASN][1000 genomes]
rs9841704	1.00[ASN][1000 genomes]
rs9851720	1.00[ASN][1000 genomes]
rs9852256	1.00[ASN][1000 genomes]
rs9857093	1.00[ASN][1000 genomes]
rs9859125	1.00[ASN][1000 genomes]
rs9860770	1.00[ASN][1000 genomes]
rs9862802	1.00[ASN][1000 genomes]
rs9863350	1.00[ASN][1000 genomes]
rs9863944	1.00[ASN][1000 genomes]
rs9868411	1.00[ASN][1000 genomes]
rs9868687	1.00[ASN][1000 genomes]
rs9869328	1.00[ASN][1000 genomes]
rs9874910	1.00[ASN][1000 genomes]
rs9878368	0.83[AFR][1000 genomes]
rs9879033	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9881534	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv508253	chr3:146282620-146301477	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9819872	CPB1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146288200-146290200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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