Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10048923	0.92[EUR][1000 genomes]
rs10049152	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10049391	0.92[EUR][1000 genomes]
rs10212287	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13315271	0.92[EUR][1000 genomes]
rs13319452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13327766	0.82[EUR][1000 genomes]
rs13434283	0.86[EUR][1000 genomes]
rs28399898	0.82[EUR][1000 genomes]
rs9289724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813974	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817716	0.82[EUR][1000 genomes]
rs9818634	0.92[EUR][1000 genomes]
rs9819872	0.84[ASW][hapmap];0.92[LWK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9823549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9824610	1.00[EUR][1000 genomes]
rs9838895	0.82[EUR][1000 genomes]
rs9847573	0.92[EUR][1000 genomes]
rs9859604	0.89[EUR][1000 genomes]
rs9861148	0.82[EUR][1000 genomes]
rs9862550	0.92[EUR][1000 genomes]
rs9867955	0.89[EUR][1000 genomes]
rs9878368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9879033	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9881924	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014493	chr3:146255594-146288414	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
2	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv508253	chr3:146282620-146301477	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146286600-146287600	Enhancers	NHLF	lung
2	chr3:146286600-146288200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:146286800-146287600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:146286800-146287600	Enhancers	HSMM	muscle
5	chr3:146287000-146287600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:146287000-146288200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:146287200-146287600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:146287200-146287600	Enhancers	Osteobl	bone
9	chr3:146287200-146288200	Enhancers	NHDF-Ad	bronchial

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