Variant report

Variant	rs9818634
Chromosome Location	chr3:146322886-146322887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10048923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10049152	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10049391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212287	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13315271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13319452	0.92[EUR][1000 genomes]
rs13327766	0.89[EUR][1000 genomes]
rs13434283	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs28399898	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3773521	1.00[AFR][1000 genomes]
rs60601385	1.00[AFR][1000 genomes]
rs73153001	1.00[AFR][1000 genomes]
rs9289724	0.92[EUR][1000 genomes]
rs9813883	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9813974	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9817716	0.89[EUR][1000 genomes]
rs9823549	0.92[EUR][1000 genomes]
rs9824610	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9838895	0.89[EUR][1000 genomes]
rs9847573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859604	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9861148	0.89[EUR][1000 genomes]
rs9862550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862582	1.00[AFR][1000 genomes]
rs9867955	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9878368	0.92[EUR][1000 genomes]
rs9879033	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9880682	1.00[AFR][1000 genomes]
rs9881924	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146320800-146325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146322600-146323000	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:146322600-146323800	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:146322800-146323400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links