Variant report

Variant	rs9862550
Chromosome Location	chr3:146308199-146308200
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10048923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10049152	1.00[EUR][1000 genomes]
rs10049391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212287	0.92[EUR][1000 genomes]
rs13315271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13319452	0.92[EUR][1000 genomes]
rs13327766	0.89[EUR][1000 genomes]
rs13434283	0.93[EUR][1000 genomes]
rs28399898	0.89[EUR][1000 genomes]
rs9289724	0.92[EUR][1000 genomes]
rs9813883	0.92[EUR][1000 genomes]
rs9813974	0.92[EUR][1000 genomes]
rs9817716	0.89[EUR][1000 genomes]
rs9818634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9823549	0.92[EUR][1000 genomes]
rs9824610	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9838895	0.89[EUR][1000 genomes]
rs9847573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859604	0.96[EUR][1000 genomes]
rs9861148	0.89[EUR][1000 genomes]
rs9867955	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9878368	0.92[EUR][1000 genomes]
rs9879033	0.92[EUR][1000 genomes]
rs9881924	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146298600-146313200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146301400-146308200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:146302600-146316400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:146305000-146308200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:146307600-146308600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:146308000-146308600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:146308000-146308600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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