Variant report
| Variant | rs9861148 |
|---|---|
| Chromosome Location | chr3:146353924-146353925 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:146353700..146355636-chr3:146357021..146358712,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10048923 | 0.89[EUR][1000 genomes] |
| rs10049152 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs10049391 | 0.89[EUR][1000 genomes] |
| rs10212287 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs13315271 | 0.89[EUR][1000 genomes] |
| rs13319452 | 0.82[EUR][1000 genomes] |
| rs13327766 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13434283 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs28399898 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9289724 | 0.82[EUR][1000 genomes] |
| rs9813883 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs9813974 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs9817716 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9818634 | 0.89[EUR][1000 genomes] |
| rs9823549 | 0.82[EUR][1000 genomes] |
| rs9824610 | 0.82[EUR][1000 genomes] |
| rs9838895 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9847573 | 0.89[EUR][1000 genomes] |
| rs9859604 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9862550 | 0.89[EUR][1000 genomes] |
| rs9862582 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9867955 | 0.86[EUR][1000 genomes] |
| rs9878368 | 0.82[EUR][1000 genomes] |
| rs9879033 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs9881924 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3440040 | chr3:146352087-146354635 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | esv3443073 | chr3:146352162-146354710 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | esv3372636 | chr3:146352712-146354260 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146352400-146354000 | Weak transcription | HepG2 | liver |
