Variant report

Variant	rs13315271
Chromosome Location	chr3:146300014-146300015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146296197..146299106-chr3:146299560..146302239,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10048923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10049152	1.00[EUR][1000 genomes]
rs10049391	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212287	0.92[EUR][1000 genomes]
rs13319452	0.92[EUR][1000 genomes]
rs13327766	0.89[EUR][1000 genomes]
rs13434283	0.93[EUR][1000 genomes]
rs28399898	0.89[EUR][1000 genomes]
rs9289724	0.92[EUR][1000 genomes]
rs9813883	0.92[EUR][1000 genomes]
rs9813974	0.92[EUR][1000 genomes]
rs9817716	0.89[EUR][1000 genomes]
rs9818634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9823549	0.92[EUR][1000 genomes]
rs9824610	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9838895	0.89[EUR][1000 genomes]
rs9847573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9859604	0.96[EUR][1000 genomes]
rs9861148	0.89[EUR][1000 genomes]
rs9862550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9867955	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9878368	0.92[EUR][1000 genomes]
rs9879033	0.92[EUR][1000 genomes]
rs9881924	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv508253	chr3:146282620-146301477	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146297200-146300400	Enhancers	HepG2	liver
2	chr3:146297800-146300200	Enhancers	HMEC	breast
3	chr3:146297800-146300400	Enhancers	NHEK	skin
4	chr3:146298000-146300400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:146298400-146300200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:146298600-146313200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:146299200-146300200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:146299200-146301200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:146299600-146301000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr3:146299600-146301400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:146299800-146300200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:146299800-146300200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:146299800-146300200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:146299800-146300400	Enhancers	Hela-S3	cervix
15	chr3:146299800-146300800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:146299800-146301400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr3:146299800-146301400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:146299800-146302000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr3:146300000-146300200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:146300000-146300400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
21	chr3:146300000-146301000	ZNF genes & repeats	Liver	Liver
22	chr3:146300000-146301200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:146300000-146301400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:146300000-146301600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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