Variant report
| Variant | rs9823549 |
|---|---|
| Chromosome Location | chr3:146285726-146285727 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10048923 | 0.92[EUR][1000 genomes] |
| rs10049152 | 0.92[EUR][1000 genomes] |
| rs10049391 | 0.92[EUR][1000 genomes] |
| rs10212287 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13315271 | 0.92[EUR][1000 genomes] |
| rs13319452 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13327766 | 0.82[EUR][1000 genomes] |
| rs13434283 | 0.86[EUR][1000 genomes] |
| rs28399898 | 0.82[EUR][1000 genomes] |
| rs9289724 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9813883 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9813974 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9817716 | 0.82[EUR][1000 genomes] |
| rs9818634 | 0.92[EUR][1000 genomes] |
| rs9819872 | 0.85[AFR][1000 genomes] |
| rs9824610 | 1.00[EUR][1000 genomes] |
| rs9838895 | 0.82[EUR][1000 genomes] |
| rs9847573 | 0.92[EUR][1000 genomes] |
| rs9859604 | 0.89[EUR][1000 genomes] |
| rs9861148 | 0.82[EUR][1000 genomes] |
| rs9862550 | 0.92[EUR][1000 genomes] |
| rs9867955 | 0.89[EUR][1000 genomes] |
| rs9878368 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9879033 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9881924 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014493 | chr3:146255594-146288414 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | n/a |
| 2 | nsv432489 | chr3:146271370-146323969 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv877623 | chr3:146278616-146319368 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv508253 | chr3:146282620-146301477 | Weak transcription ZNF genes & repeats Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146275800-146286200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
