Variant report

Variant	rs9862582
Chromosome Location	chr3:146398516-146398517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13327766	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13434283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28399898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28579087	0.84[EUR][1000 genomes]
rs28716786	0.84[EUR][1000 genomes]
rs3773521	1.00[AFR][1000 genomes]
rs60601385	1.00[AFR][1000 genomes]
rs73153001	1.00[AFR][1000 genomes]
rs9816127	0.84[EUR][1000 genomes]
rs9817716	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9818634	1.00[AFR][1000 genomes]
rs9838895	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9859604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9861148	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9880682	1.00[AFR][1000 genomes]
rs9881924	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv4047	chr3:146368154-146401858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3369526	chr3:146374303-146400737	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146397600-146399200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:146398400-146398600	Enhancers	Brain Germinal Matrix	brain
3	chr3:146398400-146399000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:146398400-146404200	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links