Variant report
Variant | rs6809355 |
---|---|
Chromosome Location | chr3:146520009-146520010 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10222373 | 1.00[ASN][1000 genomes] |
rs10470459 | 1.00[ASN][1000 genomes] |
rs10470460 | 1.00[ASN][1000 genomes] |
rs10935644 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12330695 | 1.00[ASN][1000 genomes] |
rs12695830 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1319533 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13324524 | 1.00[ASN][1000 genomes] |
rs13324873 | 1.00[ASN][1000 genomes] |
rs13325265 | 1.00[ASN][1000 genomes] |
rs13353410 | 1.00[ASN][1000 genomes] |
rs1402737 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1431967 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1431969 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1521579 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1521580 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1521588 | 0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17368735 | 1.00[ASN][1000 genomes] |
rs2116430 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2116431 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28498057 | 1.00[ASN][1000 genomes] |
rs28539305 | 1.00[ASN][1000 genomes] |
rs2868954 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28729741 | 1.00[ASN][1000 genomes] |
rs55848109 | 1.00[ASN][1000 genomes] |
rs56737593 | 1.00[ASN][1000 genomes] |
rs58365455 | 1.00[ASN][1000 genomes] |
rs6771456 | 1.00[ASN][1000 genomes] |
rs6783801 | 1.00[ASN][1000 genomes] |
rs6794178 | 1.00[ASN][1000 genomes] |
rs6808571 | 1.00[ASN][1000 genomes] |
rs73156972 | 1.00[ASN][1000 genomes] |
rs73156981 | 1.00[ASN][1000 genomes] |
rs73156988 | 1.00[ASN][1000 genomes] |
rs73156990 | 1.00[ASN][1000 genomes] |
rs73159103 | 1.00[ASN][1000 genomes] |
rs73159127 | 1.00[ASN][1000 genomes] |
rs73159146 | 1.00[ASN][1000 genomes] |
rs73159151 | 1.00[ASN][1000 genomes] |
rs73159171 | 1.00[ASN][1000 genomes] |
rs7610634 | 1.00[ASN][1000 genomes] |
rs7614167 | 1.00[ASN][1000 genomes] |
rs7626080 | 1.00[ASN][1000 genomes] |
rs7636940 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7640043 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7642381 | 0.81[EUR][1000 genomes] |
rs7642386 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs7642952 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7650149 | 1.00[ASN][1000 genomes] |
rs9289733 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9810942 | 1.00[ASN][1000 genomes] |
rs9814690 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9818401 | 1.00[ASN][1000 genomes] |
rs9820879 | 1.00[ASN][1000 genomes] |
rs9826710 | 1.00[ASN][1000 genomes] |
rs9831349 | 1.00[ASN][1000 genomes] |
rs9835696 | 1.00[ASN][1000 genomes] |
rs9836951 | 1.00[ASN][1000 genomes] |
rs9841310 | 1.00[ASN][1000 genomes] |
rs9841704 | 1.00[ASN][1000 genomes] |
rs9847241 | 1.00[ASN][1000 genomes] |
rs9850124 | 1.00[ASN][1000 genomes] |
rs9851720 | 1.00[ASN][1000 genomes] |
rs9852256 | 1.00[ASN][1000 genomes] |
rs9857093 | 1.00[ASN][1000 genomes] |
rs9859125 | 1.00[ASN][1000 genomes] |
rs9860770 | 1.00[ASN][1000 genomes] |
rs9861056 | 1.00[ASN][1000 genomes] |
rs9862802 | 1.00[ASN][1000 genomes] |
rs9863350 | 1.00[ASN][1000 genomes] |
rs9863944 | 1.00[ASN][1000 genomes] |
rs9868411 | 1.00[ASN][1000 genomes] |
rs9868687 | 1.00[ASN][1000 genomes] |
rs9869328 | 1.00[ASN][1000 genomes] |
rs9872644 | 1.00[ASN][1000 genomes] |
rs9874910 | 1.00[ASN][1000 genomes] |
rs9881534 | 1.00[ASN][1000 genomes] |
rs9881735 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv516386 | chr3:146366513-146758405 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv591961 | chr3:146394094-146725217 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1007875 | chr3:146401461-146776618 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
4 | nsv877624 | chr3:146414837-146536741 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv998040 | chr3:146416916-146729962 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv536760 | chr3:146416916-146729962 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
7 | nsv1001931 | chr3:146419061-146745361 | Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
8 | nsv877625 | chr3:146461435-146521978 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv1005776 | chr3:146511378-146599221 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
10 | nsv460881 | chr3:146512753-146569037 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
11 | nsv591962 | chr3:146512753-146569037 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:146514200-146520400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr3:146519200-146523000 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr3:146519400-146522000 | Enhancers | HUES6 Cell Line | embryonic stem cell |
4 | chr3:146519600-146522000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
5 | chr3:146519600-146532800 | Weak transcription | NHLF | lung |
6 | chr3:146519800-146520200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
7 | chr3:146519800-146521000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
8 | chr3:146520000-146523000 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |