Variant report

Variant	rs9856441
Chromosome Location	chr3:102334648-102334649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10937068	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17773589	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17824625	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1949310	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1949311	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2895217	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272547	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62272551	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62272554	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62272555	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62274188	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274190	1.00[ASN][1000 genomes]
rs67665025	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67848766	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6802319	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9876060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1843717	chr3:102251299-102364297	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102333800-102334800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:102334400-102335400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:102334600-102335400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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