Variant report
| Variant | rs17773589 |
|---|---|
| Chromosome Location | chr3:102328237-102328238 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10937024 | 0.85[CHD][hapmap] |
| rs10937068 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11720144 | 0.85[CHD][hapmap] |
| rs12054046 | 0.85[CHD][hapmap] |
| rs12233481 | 0.85[CHD][hapmap] |
| rs1473269 | 0.85[CHD][hapmap] |
| rs16845024 | 0.85[CHD][hapmap] |
| rs17824625 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1949310 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1949311 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2164264 | 0.85[CHD][hapmap] |
| rs2895217 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3891857 | 0.85[CHD][hapmap] |
| rs62272547 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62272551 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62272554 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62272555 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62274188 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62274190 | 0.88[ASN][1000 genomes] |
| rs67665025 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6784389 | 0.85[CHD][hapmap] |
| rs6784826 | 0.85[CHD][hapmap] |
| rs67848766 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6802319 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7626999 | 0.85[CHD][hapmap] |
| rs7646053 | 0.85[CHD][hapmap] |
| rs7653110 | 0.85[CHD][hapmap] |
| rs9290704 | 0.85[CHD][hapmap] |
| rs9856441 | 0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9876060 | 0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007340 | chr3:102108954-102725099 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv536676 | chr3:102108954-102725099 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1009392 | chr3:102199756-102631205 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | esv1843717 | chr3:102251299-102364297 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:102327200-102328400 | Enhancers | Hela-S3 | cervix |
| 2 | chr3:102327800-102328800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
