Variant report

Variant	rs986822
Chromosome Location	chr5:29888312-29888313
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520952	0.88[CEU][hapmap]
rs10940827	0.94[CEU][hapmap]
rs12523035	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs1366313	0.91[AMR][1000 genomes]
rs1428312	0.89[CEU][hapmap]
rs1428314	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs16899407	0.83[CEU][hapmap]
rs16899413	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs16899416	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs16899419	0.94[CEU][hapmap]
rs16899687	0.90[AMR][1000 genomes]
rs2019012	0.91[CHB][hapmap]
rs2330316	0.89[CEU][hapmap]
rs2925526	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385368	chr5:29548608-29910057	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1018779	chr5:29861138-29937229	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1029641	chr5:29861138-29940871	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29887800-29889800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links