Variant report

Variant	rs9876973
Chromosome Location	chr3:112035287-112035288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10804500	0.85[ASN][1000 genomes]
rs10934166	0.86[ASN][1000 genomes]
rs10934167	0.86[ASN][1000 genomes]
rs10934169	0.85[ASN][1000 genomes]
rs11710561	0.85[ASN][1000 genomes]
rs11712036	0.86[ASN][1000 genomes]
rs11719721	0.86[ASN][1000 genomes]
rs11917566	0.86[ASN][1000 genomes]
rs11917581	0.84[ASN][1000 genomes]
rs12629421	0.86[ASN][1000 genomes]
rs12630238	0.86[ASN][1000 genomes]
rs12630278	0.86[ASN][1000 genomes]
rs12633029	0.86[ASN][1000 genomes]
rs12634619	0.86[ASN][1000 genomes]
rs12639474	0.85[ASN][1000 genomes]
rs13069751	0.86[ASN][1000 genomes]
rs13069935	0.93[ASN][1000 genomes]
rs13070091	0.93[ASN][1000 genomes]
rs1317243	0.87[ASN][1000 genomes]
rs16859469	0.86[ASN][1000 genomes]
rs1814987	0.86[ASN][1000 genomes]
rs1879511	0.84[ASN][1000 genomes]
rs1879513	0.93[ASN][1000 genomes]
rs1879514	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2895395	0.85[ASN][1000 genomes]
rs4355253	0.85[ASN][1000 genomes]
rs4355254	0.85[ASN][1000 genomes]
rs4682101	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58425909	0.84[ASN][1000 genomes]
rs59202208	0.86[ASN][1000 genomes]
rs59744939	0.85[ASN][1000 genomes]
rs62278831	0.86[ASN][1000 genomes]
rs62278832	0.86[ASN][1000 genomes]
rs62278833	0.86[ASN][1000 genomes]
rs62278834	0.85[ASN][1000 genomes]
rs62278835	0.86[ASN][1000 genomes]
rs62278836	0.86[ASN][1000 genomes]
rs62278837	0.86[ASN][1000 genomes]
rs62278838	0.86[ASN][1000 genomes]
rs62278839	0.86[ASN][1000 genomes]
rs62278841	0.84[ASN][1000 genomes]
rs62278842	0.85[ASN][1000 genomes]
rs62278844	0.85[ASN][1000 genomes]
rs62278846	0.84[ASN][1000 genomes]
rs62278848	0.85[ASN][1000 genomes]
rs62278849	0.85[ASN][1000 genomes]
rs62278850	0.85[ASN][1000 genomes]
rs62278853	0.84[ASN][1000 genomes]
rs62278854	0.85[ASN][1000 genomes]
rs62278855	0.86[ASN][1000 genomes]
rs62278856	0.85[ASN][1000 genomes]
rs6438064	0.93[ASN][1000 genomes]
rs6438065	0.93[ASN][1000 genomes]
rs6762106	0.93[ASN][1000 genomes]
rs6764384	0.85[ASN][1000 genomes]
rs6773206	0.93[ASN][1000 genomes]
rs6780745	0.93[ASN][1000 genomes]
rs6787547	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6787841	0.85[ASN][1000 genomes]
rs6788309	0.85[ASN][1000 genomes]
rs6789161	0.85[ASN][1000 genomes]
rs6798354	0.93[ASN][1000 genomes]
rs6798486	0.93[ASN][1000 genomes]
rs6801708	0.84[ASN][1000 genomes]
rs6801739	0.85[ASN][1000 genomes]
rs6805117	0.93[ASN][1000 genomes]
rs6805142	0.91[ASN][1000 genomes]
rs6808365	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72950242	0.86[ASN][1000 genomes]
rs72950273	0.85[ASN][1000 genomes]
rs7653490	0.86[ASN][1000 genomes]
rs8179913	0.93[ASN][1000 genomes]
rs869042	0.84[ASN][1000 genomes]
rs9755930	0.92[ASN][1000 genomes]
rs9814721	0.93[ASN][1000 genomes]
rs9823309	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9852176	0.93[ASN][1000 genomes]
rs9856838	0.93[ASN][1000 genomes]
rs9868582	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112033000-112036400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr3:112033800-112037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:112034200-112037000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:112034800-112036200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr3:112034800-112036200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:112035000-112038000	Weak transcription	HMEC	breast

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