Variant report

Variant	rs9877089
Chromosome Location	chr3:136656593-136656594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136656593..136659304-chr3:136661529..136663519,2	MCF-7	breast:
2	chr3:136655622..136657688-chr3:136659902..136662004,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1052620	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9840500	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9867325	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136619200-136656800	Weak transcription	NHLF	lung
2	chr3:136624200-136664400	Weak transcription	Aorta	Aorta
3	chr3:136626000-136661600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:136626600-136661000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:136632600-136657000	Weak transcription	HepG2	liver
6	chr3:136633800-136660200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:136634800-136656800	Weak transcription	NH-A	brain
8	chr3:136635000-136656600	Weak transcription	K562	blood
9	chr3:136637600-136661400	Weak transcription	Left Ventricle	heart
10	chr3:136638800-136664400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:136639000-136664400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:136641000-136670000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:136643800-136661400	Weak transcription	Small Intestine	intestine
14	chr3:136644600-136656800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:136645400-136664200	Weak transcription	Placenta	Placenta
16	chr3:136645800-136664600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:136646200-136660000	Weak transcription	Lung	lung
18	chr3:136646200-136664400	Weak transcription	Ovary	ovary
19	chr3:136646600-136673800	Weak transcription	Pancreas	Pancrea
20	chr3:136647600-136657600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:136647600-136660800	Weak transcription	Thymus	Thymus
22	chr3:136647600-136661000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:136647600-136664400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:136648200-136657200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:136648600-136673800	Weak transcription	Fetal Intestine Small	intestine
26	chr3:136649000-136661200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:136650200-136666600	Weak transcription	Brain Angular Gyrus	brain
28	chr3:136650200-136669400	Weak transcription	Colonic Mucosa	Colon
29	chr3:136650400-136656600	Weak transcription	Osteobl	bone
30	chr3:136650600-136656600	Weak transcription	NHDF-Ad	bronchial
31	chr3:136650800-136661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:136650800-136664400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:136651000-136661200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:136651000-136661400	Weak transcription	Esophagus	oesophagus
35	chr3:136652200-136656600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:136652200-136656600	Weak transcription	HSMMtube	muscle
37	chr3:136652200-136656800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:136652200-136656800	Weak transcription	Liver	Liver
39	chr3:136652400-136656600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:136652400-136656600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr3:136652400-136656600	Weak transcription	Adipose Nuclei	Adipose
42	chr3:136652400-136656600	Weak transcription	NHEK	skin
43	chr3:136652400-136656800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:136652400-136656800	Weak transcription	Stomach Mucosa	stomach
45	chr3:136652400-136657200	Weak transcription	Colon Smooth Muscle	Colon
46	chr3:136652400-136661400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:136652400-136661800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr3:136652400-136664600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr3:136652600-136656600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:136652600-136656800	Weak transcription	HMEC	breast

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