Variant report

Variant	rs9880470
Chromosome Location	chr3:140702420-140702421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11710204	0.81[ASN][1000 genomes]
rs11718539	0.81[ASN][1000 genomes]
rs12489397	0.81[ASN][1000 genomes]
rs1568337	0.81[ASN][1000 genomes]
rs2555702	0.81[ASN][1000 genomes]
rs2555707	0.81[ASN][1000 genomes]
rs35140461	0.81[ASN][1000 genomes]
rs61151473	0.81[ASN][1000 genomes]
rs6785007	0.81[ASN][1000 genomes]
rs72991046	0.81[ASN][1000 genomes]
rs7621150	0.81[ASN][1000 genomes]
rs7643287	0.81[ASN][1000 genomes]
rs7643434	0.81[ASN][1000 genomes]
rs7643614	0.81[ASN][1000 genomes]
rs7644725	0.81[ASN][1000 genomes]
rs877142	0.81[ASN][1000 genomes]
rs9880468	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140664200-140703800	Weak transcription	Aorta	Aorta
2	chr3:140696000-140702800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:140700400-140704200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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