Variant report

Variant	rs9880468
Chromosome Location	chr3:140702418-140702419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10935413	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10935414	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11710204	0.84[ASN][1000 genomes]
rs11713816	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11718539	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12489397	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13063450	0.87[EUR][1000 genomes]
rs13099706	0.87[EUR][1000 genomes]
rs1568337	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1593623	0.83[EUR][1000 genomes]
rs16851001	0.83[EUR][1000 genomes]
rs2042759	0.81[EUR][1000 genomes]
rs2081662	0.87[EUR][1000 genomes]
rs2292919	0.82[ASN][1000 genomes]
rs2311491	0.87[EUR][1000 genomes]
rs2555702	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2555707	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35140461	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4068843	0.82[EUR][1000 genomes]
rs4524250	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4528914	0.86[EUR][1000 genomes]
rs4538351	0.87[EUR][1000 genomes]
rs61151473	0.84[ASN][1000 genomes]
rs6439964	0.87[EUR][1000 genomes]
rs6439969	0.83[EUR][1000 genomes]
rs67142314	0.83[EUR][1000 genomes]
rs6764740	0.86[EUR][1000 genomes]
rs6767867	0.86[EUR][1000 genomes]
rs6770562	0.83[EUR][1000 genomes]
rs6772634	0.87[EUR][1000 genomes]
rs6773249	0.87[EUR][1000 genomes]
rs6785007	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6785892	0.87[EUR][1000 genomes]
rs6788711	0.87[EUR][1000 genomes]
rs6789045	0.86[EUR][1000 genomes]
rs6789116	0.86[EUR][1000 genomes]
rs6789265	0.83[EUR][1000 genomes]
rs6797079	0.87[EUR][1000 genomes]
rs6809144	0.83[EUR][1000 genomes]
rs713354	0.87[EUR][1000 genomes]
rs72991046	0.84[ASN][1000 genomes]
rs7621150	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7627987	0.83[EUR][1000 genomes]
rs7631373	0.83[EUR][1000 genomes]
rs7643287	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7643434	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7643614	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7644725	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7650179	0.83[EUR][1000 genomes]
rs7650190	0.83[EUR][1000 genomes]
rs7652381	0.87[EUR][1000 genomes]
rs765990	0.87[EUR][1000 genomes]
rs877142	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs957093	0.87[EUR][1000 genomes]
rs9833041	0.83[EUR][1000 genomes]
rs9880470	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140664200-140703800	Weak transcription	Aorta	Aorta
2	chr3:140696000-140702800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:140700400-140704200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links