Variant report

Variant	rs6789265
Chromosome Location	chr3:140739083-140739084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140737164..140739325-chr3:140761875..140763616,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1047330	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1056127	0.82[JPT][hapmap]
rs10935413	0.83[EUR][1000 genomes]
rs10935414	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs11710926	0.84[JPT][hapmap]
rs11711131	0.83[JPT][hapmap]
rs11713816	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs11714438	0.83[JPT][hapmap]
rs11715248	0.84[JPT][hapmap]
rs11717097	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs11717620	0.84[JPT][hapmap]
rs11718040	0.84[JPT][hapmap]
rs11718539	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11718563	0.84[JPT][hapmap]
rs11720342	0.83[JPT][hapmap]
rs12489397	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs13063450	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13099706	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1568337	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1593623	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16850917	0.83[JPT][hapmap]
rs16850921	0.83[JPT][hapmap]
rs16850924	0.83[JPT][hapmap]
rs16850926	0.84[JPT][hapmap]
rs16851001	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2042759	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2081662	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2311491	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2555702	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs2555707	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs35140461	0.86[EUR][1000 genomes]
rs3755764	0.84[JPT][hapmap]
rs3773835	0.83[JPT][hapmap]
rs3773837	0.83[JPT][hapmap]
rs3773838	0.84[JPT][hapmap]
rs4068843	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4380393	0.88[ASN][1000 genomes]
rs4524250	0.85[EUR][1000 genomes]
rs4528914	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4538351	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61052022	0.82[ASN][1000 genomes]
rs6439964	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6439965	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6439969	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67142314	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764740	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6767867	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6770562	0.85[EUR][1000 genomes]
rs6772634	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6773249	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6785007	0.86[EUR][1000 genomes]
rs6785892	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6788711	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6789045	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6789116	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6797079	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6809144	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs713354	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs7621150	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7627987	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7631373	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7643287	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7643434	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7643614	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs7644725	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7650179	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7650190	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7652381	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs765990	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs877142	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs957093	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9833041	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9880468	0.83[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140732800-140739400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:140733000-140739200	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:140733000-140739400	Weak transcription	HSMMtube	muscle
4	chr3:140737000-140739200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:140737000-140739400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:140738800-140741000	Enhancers	HSMM	muscle
7	chr3:140739000-140739800	Enhancers	Dnd41	blood
8	chr3:140739000-140740800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:140739000-140740800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links