Variant report

Variant	rs2081662
Chromosome Location	chr3:140727355-140727356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140725449..140727394-chr3:140730861..140733753,2	MCF-7	breast:
2	chr3:140721359..140724140-chr3:140726631..140728151,2	K562	blood:
3	chr3:140726403..140729285-chr3:140732713..140734427,2	K562	blood:
4	chr3:140727306..140728219-chr3:140824324..140824933,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1047330	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1056126	0.86[ASN][1000 genomes]
rs1056127	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10935413	0.86[EUR][1000 genomes]
rs10935414	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs1109282	0.82[JPT][hapmap]
rs1109283	0.83[JPT][hapmap]
rs11707116	0.84[ASN][1000 genomes]
rs11710926	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11711131	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11713505	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11713816	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11714438	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11715248	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11717097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11717620	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11718040	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11718539	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs11718563	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11720342	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12489397	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13063450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568337	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs1593623	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1593624	0.86[ASN][1000 genomes]
rs16850915	0.84[ASN][1000 genomes]
rs16850917	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs16850921	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs16850924	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs16850926	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs16851001	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2042759	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2292919	0.82[JPT][hapmap]
rs2310859	0.83[EUR][1000 genomes]
rs2311491	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2555702	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2555707	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs2871615	0.82[JPT][hapmap]
rs35140461	0.90[EUR][1000 genomes]
rs3755764	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs3755765	0.86[ASN][1000 genomes]
rs3773835	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs3773837	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs3773838	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4068843	0.95[EUR][1000 genomes]
rs4380393	0.97[ASN][1000 genomes]
rs4524250	0.88[EUR][1000 genomes]
rs4528914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4538351	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57151068	0.86[ASN][1000 genomes]
rs57526660	0.86[ASN][1000 genomes]
rs57799705	0.86[ASN][1000 genomes]
rs59128309	0.86[ASN][1000 genomes]
rs59221985	0.86[ASN][1000 genomes]
rs61052022	0.84[ASN][1000 genomes]
rs61629363	0.86[ASN][1000 genomes]
rs61708145	0.86[ASN][1000 genomes]
rs6439962	0.86[ASN][1000 genomes]
rs6439964	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439965	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6439969	0.96[EUR][1000 genomes]
rs67142314	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6764740	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6767867	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6770562	0.88[EUR][1000 genomes]
rs6772634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785007	0.90[EUR][1000 genomes]
rs6785892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788711	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6789045	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6789116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789265	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6797079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809144	0.96[EUR][1000 genomes]
rs6810200	0.86[ASN][1000 genomes]
rs713354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7621150	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7626525	0.84[ASN][1000 genomes]
rs7627987	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7631373	0.96[EUR][1000 genomes]
rs7632043	0.84[ASN][1000 genomes]
rs7643287	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs7643434	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs7643614	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7644725	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7649116	0.85[ASN][1000 genomes]
rs7650179	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7650190	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7652381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs765990	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877142	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs957093	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9833041	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9880468	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140727200-140728600	Enhancers	Brain Germinal Matrix	brain

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