Variant report

Variant	rs16850915
Chromosome Location	chr3:140646641-140646642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140631695..140633968-chr3:140644648..140646807,2	K562	blood:
2	chr3:140646297..140647168-chr3:140660373..140660911,2	MCF-7	breast:
3	chr3:140645222..140647869-chr3:140659939..140662297,3	K562	blood:
4	chr3:140645748..140651447-chr3:140658379..140662815,6	MCF-7	breast:
5	chr3:140642736..140646722-chr3:140659939..140663193,5	K562	blood:
6	chr3:140645140..140648440-chr3:140656551..140659391,3	K562	blood:

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1047330	0.83[ASN][1000 genomes]
rs1056126	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1056127	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935413	0.89[ASN][1000 genomes]
rs10935414	0.89[ASN][1000 genomes]
rs1109282	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1109283	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11707116	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11710204	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11710926	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11711131	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11713505	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11713816	0.89[ASN][1000 genomes]
rs11714438	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11715248	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11717097	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11717620	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11718040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11718539	0.87[ASN][1000 genomes]
rs11718563	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11720342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489397	0.87[ASN][1000 genomes]
rs13063450	0.84[ASN][1000 genomes]
rs13099706	0.84[ASN][1000 genomes]
rs1568337	0.87[ASN][1000 genomes]
rs1593624	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16850917	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16850921	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16850924	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16850926	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2081662	0.84[ASN][1000 genomes]
rs2292919	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2310859	0.81[ASN][1000 genomes]
rs2311491	0.82[ASN][1000 genomes]
rs2555702	0.87[ASN][1000 genomes]
rs2555707	0.87[ASN][1000 genomes]
rs2871615	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35140461	0.87[ASN][1000 genomes]
rs3755764	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3755765	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3773835	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3773837	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3773838	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4380393	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4524250	0.88[ASN][1000 genomes]
rs4528914	0.82[ASN][1000 genomes]
rs4538351	0.83[ASN][1000 genomes]
rs57151068	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57526660	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57799705	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59128309	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59221985	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61052022	0.85[EUR][1000 genomes]
rs61151473	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61629363	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61708145	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439962	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439964	0.84[ASN][1000 genomes]
rs6764740	0.82[ASN][1000 genomes]
rs6770562	0.83[ASN][1000 genomes]
rs6772634	0.84[ASN][1000 genomes]
rs6773249	0.84[ASN][1000 genomes]
rs6785007	0.87[ASN][1000 genomes]
rs6785892	0.84[ASN][1000 genomes]
rs6788711	0.84[ASN][1000 genomes]
rs6789045	0.81[ASN][1000 genomes]
rs6789116	0.82[ASN][1000 genomes]
rs6797079	0.84[ASN][1000 genomes]
rs6810200	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72991025	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72991046	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7621150	0.87[ASN][1000 genomes]
rs7626525	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7632043	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7637899	0.85[EUR][1000 genomes]
rs7638206	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643287	0.87[ASN][1000 genomes]
rs7643434	0.87[ASN][1000 genomes]
rs7643614	0.87[ASN][1000 genomes]
rs7644725	0.87[ASN][1000 genomes]
rs7649116	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs765990	0.84[ASN][1000 genomes]
rs877142	0.87[ASN][1000 genomes]
rs957093	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv521218	chr3:140643038-140665147	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3364537	chr3:140646303-140668571	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16850915	SLC25A36	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140641600-140646800	Weak transcription	Pancreas	Pancrea
2	chr3:140646400-140646800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:140646400-140646800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:140646400-140647000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:140646600-140646800	Enhancers	HMEC	breast
6	chr3:140646600-140646800	Enhancers	NHEK	skin
7	chr3:140646600-140647000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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