Variant report

Variant	rs72991025
Chromosome Location	chr3:140641983-140641984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:140641240..140642122-chr3:140910840..140911783,2	MCF-7	breast:
2	chr3:140641214..140642093-chr3:140910815..140911387,4	K562	blood:
3	chr3:140634376..140636295-chr3:140641836..140643560,2	MCF-7	breast:
4	chr3:140640464..140644389-chr3:140659845..140663007,5	MCF-7	breast:
5	chr3:140641570..140644550-chr3:140649016..140650744,2	K562	blood:
6	chr3:140616848..140617839-chr3:140641322..140642050,3	MCF-7	breast:
7	chr3:140641446..140642192-chr3:140824178..140825116,5	K562	blood:
8	chr3:140641190..140642088-chr3:140691101..140691926,3	MCF-7	breast:
9	chr3:140641218..140642370-chr3:140691418..140692499,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000114120	Chromatin interaction
ENSG00000248773	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1056126	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1056127	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10935413	0.80[ASN][1000 genomes]
rs10935414	0.80[ASN][1000 genomes]
rs1109282	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1109283	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11707116	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11710204	0.93[EUR][1000 genomes]
rs11710926	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11711131	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11713505	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11713816	0.80[ASN][1000 genomes]
rs11714438	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11715248	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11717097	0.86[EUR][1000 genomes]
rs11717620	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11718040	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11718563	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11720342	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1593624	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16850915	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16850917	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16850921	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16850924	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16850926	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2292919	0.95[EUR][1000 genomes]
rs2310859	0.90[ASN][1000 genomes]
rs2871615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3755764	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3755765	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3773835	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3773837	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3773838	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4380393	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57151068	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57526660	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57799705	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59128309	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59221985	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61052022	0.83[EUR][1000 genomes]
rs61151473	0.90[EUR][1000 genomes]
rs61629363	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61708145	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6439962	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6810200	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72991046	0.90[EUR][1000 genomes]
rs7626525	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7632043	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7637899	0.87[EUR][1000 genomes]
rs7638206	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7649116	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591865	chr3:140396022-140728850	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1005522	chr3:140454632-140685915	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536732	chr3:140454632-140685915	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140636800-140642000	Weak transcription	Left Ventricle	heart
2	chr3:140637400-140642000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:140641200-140644400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:140641600-140643200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:140641600-140646800	Weak transcription	Pancreas	Pancrea

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